View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7843_high_5 (Length: 250)
Name: NF7843_high_5
Description: NF7843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7843_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 42226898 - 42227095
Alignment:
| Q |
12 |
acacacgcatataacgagaggtattcgaacaaatatttgtccatacacatcagtcaaggatcaagagacataacctgacaaatttatcaaaggtggcgaa |
111 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42226898 |
acacacgcatataac-agaggtattcgaacaaatatttgtccatacacatcagtcaaggatcaagagacataacctgacaaatttatcaaaggtggcgaa |
42226996 |
T |
|
| Q |
112 |
atcttaacacaaaatctttgttttgatcgaaactataaactcatgttaattaatttatgtagatactatatggcggaaggttcagggaggaagctaatg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42226997 |
atcttaacacaaaatctttgttttgatcgaaactataaactcatgttaattaatttatgtagatactatatggcggaaggttcagggaggaagctaatg |
42227095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University