View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7843_high_8 (Length: 241)
Name: NF7843_high_8
Description: NF7843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7843_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 93 - 197
Target Start/End: Original strand, 52970358 - 52970462
Alignment:
| Q |
93 |
gagaaatgcttaatagcacgacatacattgtcgtgtaagccacacaacctttgtattcctctaaacctgaattatatttattttaattaaaacttaattt |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52970358 |
gagaaatgcttaatagcacgacatacattgtcgtgtaagccgcacgacctttgtattcctataaacctgaattatatttattttaattaaaacttaattt |
52970457 |
T |
|
| Q |
193 |
agaaa |
197 |
Q |
| |
|
||||| |
|
|
| T |
52970458 |
agaaa |
52970462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 44869629 - 44869719
Alignment:
| Q |
1 |
atattgtgaagagagatatacataatttttgcagttgcgtgtggagatacttttgtttaataaaaaacttattttgcttgtccaaagaaaaa |
92 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
44869629 |
atattgtgaagagagatatacataatttttgcagttgcgtgtggagatacttttgtttaat-aaaaacttattttgcttgtccaaagaaaaa |
44869719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 92 - 229
Target Start/End: Original strand, 13284489 - 13284636
Alignment:
| Q |
92 |
agagaaatgcttaatagcacgacatacattgtcgtgtaagccacacaacc-tttgtattcctctaaacctgaatta---------tatttattttaatta |
181 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13284489 |
agagaaatgtttaatagcacgacatacattgtcgtgtaagccgcactaccttttgtattcctctaaacctgaattatatttattttatttattttaatta |
13284588 |
T |
|
| Q |
182 |
aaacttaatttagaaaaagtaggtgaagacatgtgatgtttcgtgtgt |
229 |
Q |
| |
|
|||||||||||| ||||||||||||||| || ||||| |||||||||| |
|
|
| T |
13284589 |
aaacttaatttaaaaaaagtaggtgaagccacgtgatatttcgtgtgt |
13284636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 30363248 - 30363304
Alignment:
| Q |
95 |
gaaatgcttaatagcacgacatacattgtcgtgtaagccacacaacctttgtattcc |
151 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| | || ||| ||| ||||||||| |
|
|
| T |
30363248 |
gaaatgcttaatagcacgacataaactgtcgtgtgaaccgcacgaccattgtattcc |
30363304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University