View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7843_low_10 (Length: 244)
Name: NF7843_low_10
Description: NF7843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7843_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 235
Target Start/End: Original strand, 18446350 - 18446574
Alignment:
| Q |
11 |
gacatcaattttcaccattcacaaataaatatgcactccctccggtcttgaacaatataaattttttaccaaatacagttcaacttaatgcttaaaatga |
110 |
Q |
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| T |
18446350 |
gacatcaattttcaccattcacaaataaatatgcactccctccggtcttgaacaatataaattttttaccaaatacaattcaacttaatgcttaaaatga |
18446449 |
T |
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| Q |
111 |
ccatagagagttccaagtgaagagaagatgtatagggattgacatattcatatcacacaaagcctcatcgcacagattgagcaacttacgtcattacaaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18446450 |
ccatagagagttccaagtgaagagaagatgtatagggattgacagaatcatatcacacaaagcctcatcgcacagattgagcaacttacgtcattacaaa |
18446549 |
T |
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| Q |
211 |
agtcctcttcctctgcctattcatt |
235 |
Q |
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||||||||||||||||||||||||| |
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| T |
18446550 |
agtcctcttcctctgcctattcatt |
18446574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 22 - 235
Target Start/End: Original strand, 36404125 - 36404339
Alignment:
| Q |
22 |
tcaccattcacaaataaatatgcactccctccggtcttgaacaatataaattttttaccaaatacagttcaacttaatgcttaaaatgaccatagagagt |
121 |
Q |
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| T |
36404125 |
tcaccattcacaaataaatatgcactccctccggtcttgaacaatataatttttttaccaaatactgttcaacttaatgcttaaaatgaccatagggagt |
36404224 |
T |
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| Q |
122 |
tccaagtgaagagaagatgtatagggattgacatattcatatcacac-aaagcctcatcgcacagattgagcaacttacgtcattacaaaagtcctcttc |
220 |
Q |
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| T |
36404225 |
tccaagtggagagaagatgtatagggattgacagaatcatatcacacaaaagcctcatcgcatagattgagcaacttacgtcattacaaaagtcctcttc |
36404324 |
T |
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| Q |
221 |
ctctgcctattcatt |
235 |
Q |
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| T |
36404325 |
ctctgcctattcatt |
36404339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 18578900 - 18578863
Alignment:
| Q |
12 |
acatcaattttcaccattcacaaataaatatgcactcc |
49 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |
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| T |
18578900 |
acatcaattttcaccattcacaaataaatatgtactcc |
18578863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 55353514 - 55353289
Alignment:
| Q |
11 |
gacatcaattttcaccattcacaaataaatatgcactccctccggtcttgaacaatataaattttttaccaaatacagttcaacttaatgcttaaaatga |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
55353514 |
gacatcaattttcaccattcacaaataaatatgcactccctccggtcttgaacaatataatttttttaccaaatacagttcaacttaatgcttaaaatga |
55353415 |
T |
|
| Q |
111 |
ccatagagagttccaagtgaagagaagatgtatagggattgacatattcatatcacac-aaagcctcatcgcacagattgagcaacttacgtcattacaa |
209 |
Q |
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|||||| ||||| ||| ||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
55353414 |
ccatagggagtttcaaatgaagagaagatgtatagggattgacagaatcatatcacacaaaagcctcatcgcacagattgagcaacttacgtcattacaa |
55353315 |
T |
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| Q |
210 |
aagtcctcttcctctgcctattcatt |
235 |
Q |
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||||| |||||||||||||||||||| |
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| T |
55353314 |
aagtcttcttcctctgcctattcatt |
55353289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 11 - 235
Target Start/End: Original strand, 29607417 - 29607644
Alignment:
| Q |
11 |
gacatcaattttcaccattcacaaataaatatgcactccctccggtcttgaacaatataaattttttaccaaatacagttcaacttaatgcttaaaa--- |
107 |
Q |
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||||||||||||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||| | ||||||||||||||||| ||||||||| |
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| T |
29607417 |
gacatcaattttcaccattcacaaaataatatttactcccttgggtcttgaataatataaatttttgagcaaatacagttcaacttt-tgcttaaaaaat |
29607515 |
T |
|
| Q |
108 |
tgaccatagagagttccaagtgaagagaagatgtatagggattgacatattcatatcacacaaa-gcctcatcgcacagattgagcaacttacgtcatta |
206 |
Q |
| |
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|||||| || ||||||||||||| ||| ||||||||||||||||||| | |||||||| ||||| | | ||||| | ||||||||||||||||||||| |
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| T |
29607516 |
tgaccacagggagttccaagtgatgagcagatgtatagggattgacagaatcatatcaaacaaaagtcgtatcgcttaaattgagcaacttacgtcatta |
29607615 |
T |
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| Q |
207 |
caaaagtcctcttcctctgcctattcatt |
235 |
Q |
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||| ||||||||||||||| | ||||||| |
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| T |
29607616 |
caacagtcctcttcctctgtccattcatt |
29607644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 14906158 - 14906121
Alignment:
| Q |
12 |
acatcaattttcaccattcacaaataaatatgcactcc |
49 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |
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| T |
14906158 |
acatcaattttcaccattcacaaataaatatgtactcc |
14906121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 13674236 - 13674274
Alignment:
| Q |
11 |
gacatcaattttcaccattcacaaataaatatgcactcc |
49 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |
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| T |
13674236 |
gacatcaattttcaccattcacaaataaatatgtactcc |
13674274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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