View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7843_low_12 (Length: 241)
Name: NF7843_low_12
Description: NF7843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7843_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 44869523 - 44869329
Alignment:
| Q |
1 |
acatgcttctggacttgaaaataaataggggaattgcttttatagtcaactatacacaaaaggatagaatcttaaataatcagttaaatatacatactat |
100 |
Q |
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| T |
44869523 |
acatgcttctggacttgaaaataaataggggaattgcttttatagtcaactatacacaaaaggatagaatcttaaataatcggttaaatatacatactat |
44869424 |
T |
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| Q |
101 |
ttgtacaaattggaagcaaacaatcaagtataaaagaatacacaggtatcttaatcatgcttccacattaagtcaaaataataacgcttccacat |
195 |
Q |
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| T |
44869423 |
ttgtacaaattggaagcaaacaatcaagtataaaagaatacacaggtatcttaatcatgcttccacattaagtcaaaataataacgcttccacat |
44869329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 159 - 224
Target Start/End: Complemental strand, 44869338 - 44869273
Alignment:
| Q |
159 |
gcttccacattaagtcaaaataataacgcttccacatcagtcatcatcctcaagatcaaccaccat |
224 |
Q |
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| T |
44869338 |
gcttccacattaagtcaaaataataacgcttccacatcagtcatcatcctcaagatcaaccaccat |
44869273 |
T |
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