View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7843_low_5 (Length: 389)
Name: NF7843_low_5
Description: NF7843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7843_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 41470540 - 41470782
Alignment:
| Q |
1 |
taaaatgtacatttttagttaaaaatctaacaattcagcgtagttcactttt-ataaacccggccacatattcaaactaaaggttaatcaatcattaact |
99 |
Q |
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| T |
41470540 |
taaaatgtacatttttagttaaaaatctaacaattcagcgtagttcacttttgataaacccggccacatattcaaactaaaggttaatcaatcattaact |
41470639 |
T |
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| Q |
100 |
ttattcaactccacttaattagcagttgtattgatttatgatgaactagacaaaatcgcactaacacggcaattttgttgaagctccaaattgaaaacaa |
199 |
Q |
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| T |
41470640 |
ttattcaactccacttaattagcagatgtattgatttatgatgaactagacaaaatcgcactaacacggcaattttgttgaagctccaaattgaaaacaa |
41470739 |
T |
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| Q |
200 |
aatt--agaggcacacgtcaaaatcaccatgaacctaaaccat |
240 |
Q |
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| T |
41470740 |
aattacagtggcacacgtcaaaatcaccatgaacctaaaccat |
41470782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 239 - 376
Target Start/End: Original strand, 41470805 - 41470942
Alignment:
| Q |
239 |
atcaaatttgaaccgaaatcctgagcctgaaaggataccttagatgtccccaacagttattaataatgagaaggaaatttgaaagtgcacgtggcatgaa |
338 |
Q |
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| T |
41470805 |
atcaaatttgaaccgaaatcctgagcctgaaaggataccttagatgtccccaacagttattaataatgagaaggaaatttgaaagtgcacgtggcatgaa |
41470904 |
T |
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| Q |
339 |
ggtaatataacagaggttacttggcaatcacttcatct |
376 |
Q |
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| T |
41470905 |
ggtaatataacagaggttacttggcaatcacttcatct |
41470942 |
T |
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