View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7843_low_6 (Length: 374)
Name: NF7843_low_6
Description: NF7843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7843_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 8945800 - 8945445
Alignment:
| Q |
1 |
atatatgataataccaaggaacatatcaaagacattgggaaagataatgaagttgcaactcctcttgcattgggagctggttatgttgatcccaatagag |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8945800 |
atatatgataatactaaggaacatatcaaagacattgaaaaaggtaatgaagttgcaactcctcttgcattgggagctggttatgttgatcccaatagag |
8945701 |
T |
|
| Q |
101 |
cacttgaccctggtcttgtttatgatgttggtgtacaagattatgttaatcttctttgtgcacttaacttcacacnnnnnnncatcactacgattacaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8945700 |
cacttgaccctggtcttgtttatgatgttggtgtacaagattatgttaatcttctttgtgcacttaacttcacacaaaaaaacatcactacgattacaag |
8945601 |
T |
|
| Q |
201 |
atcctctttcaatgattgttctaaaccttccttggatcttaattacccttcttttatagcttttttcaatgctggaaattcttcttcaagggccatccaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8945600 |
atcctctttcaatgattgttctaaaccttccttggatcttaattacccttcttttatagcttttttcaatgctggaaattcttcttcaagggccatccaa |
8945501 |
T |
|
| Q |
301 |
gaatttcacagaacagttaccaatgttggtgagggacaagccatttatgttgctag |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8945500 |
gaatttcacagaacagttaccaatgttggtgagggacaagccatttatgttgctag |
8945445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 6 - 336
Target Start/End: Original strand, 8958275 - 8958605
Alignment:
| Q |
6 |
tgataataccaaggaacatatcaaagacattgggaaagataatgaagttgcaactcctcttgcattgggagctggttatgttgatcccaatagagcactt |
105 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||| || |||||| ||| ||||||||| ||||||||||||||||| ||||| |||| |||||||||||| |
|
|
| T |
8958275 |
tgataatactaaggaacatattaaagacattggaaatgataataaagcagcaactccttttgcattgggagctggtcatgttaatccaaatagagcactt |
8958374 |
T |
|
| Q |
106 |
gaccctggtcttgtttatgatgttggtgtacaagattatgttaatcttctttgtgcacttaacttcacacnnnnnnncatcactacgattacaagatcct |
205 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || | ||| ||||||| | || |||||||| | |
|
|
| T |
8958375 |
gaccctggtcttatttatgatgttggtgtacaagattatgttaatcttctttgtgcacttagctactcacaaaaaaacatcactgccatcacaagatctt |
8958474 |
T |
|
| Q |
206 |
ctttcaatgattgttctaaaccttccttggatcttaattacccttcttttatagcttttttcaatgctggaaattcttcttcaagggccatccaagaatt |
305 |
Q |
| |
|
||| |||||||| ||| ||||||| ||||||||||| |||||||||||||| || || ||| || ||| ||||||||||||||| | | ||||||||| |
|
|
| T |
8958475 |
cttcgaatgattgctctgaaccttctttggatcttaactacccttcttttattgcattcttcgataatgggaattcttcttcaaggacaacccaagaatt |
8958574 |
T |
|
| Q |
306 |
tcacagaacagttaccaatgttggtgaggga |
336 |
Q |
| |
|
||| |||||| |||||||||||||||||||| |
|
|
| T |
8958575 |
tcatagaacaattaccaatgttggtgaggga |
8958605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 8963284 - 8963639
Alignment:
| Q |
1 |
atatatgataataccaaggaacatatcaaagacattgggaaagataatgaagttgcaactcctcttgcattgggagctggttatgttgatcccaatagag |
100 |
Q |
| |
|
|||| |||||| || ||||||| ||||||||||||||| |||||||| || ||||| ||| ||||||||||||||||| || | | || |||| || |
|
|
| T |
8963284 |
atatttgataacactaaggaacttatcaaagacattggaaaagataacatagcagcaacaccttttgcattgggagctggtcatatcaaccctaataaag |
8963383 |
T |
|
| Q |
101 |
cacttgaccctggtcttgtttatgatgttggtgtacaagattatgttaatcttctttgtgcacttaacttcacacnnnnnnncatcactacgattacaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||| | || ||||| |
|
|
| T |
8963384 |
cacttgaccctggtcttgtttatgatattggtgtacaagattatgttaattttctttgtgcacttaacttcacacaaaaacacattactgccataacaag |
8963483 |
T |
|
| Q |
201 |
atcctctttcaatgattgttctaaaccttccttggatcttaattacccttcttttatagcttttttcaatgctggaaattcttcttcaagggccatccaa |
300 |
Q |
| |
|
||| || | ||||||||||||||| ||||||||| |||| || |||||||||||||| ||||||||||| ||||||||||||||| ||||| | |||| |
|
|
| T |
8963484 |
atcatcatccaatgattgttctaatccttccttgcatctcaactacccttcttttattgcttttttcaacgctggaaattcttctccaaggacagcccaa |
8963583 |
T |
|
| Q |
301 |
gaatttcacagaacagttaccaatgttggtgagggacaagccatttatgttgctag |
356 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||| | ||||||||||||| |
|
|
| T |
8963584 |
gaatttcacaggacagttaccaatgttggtgaaggacaaacggtttatgttgctag |
8963639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 8974680 - 8975033
Alignment:
| Q |
1 |
atatatgataataccaaggaacatatcaaagacattgggaaagataatgaagttgcaactcctcttgcattgggagctggttatgttgatcccaatagag |
100 |
Q |
| |
|
|||| ||||||||| ||||||| || ||||||||||| |||| ||| | || ||||| ||| ||||| ||||||||| || | | ||||| | || |
|
|
| T |
8974680 |
atatttgataatactaaggaactcataaaagacattggaaaaggtaacaacgtagcaacaccttttgcacaaggagctggtcatatcaaccccaacaaag |
8974779 |
T |
|
| Q |
101 |
cacttgaccctggtcttgtttatgatgttggtgtacaagattatgttaatcttctttgtgcacttaacttcacacnnnnnnncatcactacgattacaag |
200 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||| |||||||| |
|
|
| T |
8974780 |
cacttaaccctggacttgtttatgatgttggtgtacaagattatgtcaatcttctttgtgcactcaacttcacacaaaaaaacatcactatcattacaag |
8974879 |
T |
|
| Q |
201 |
atcctctttcaatgattgttctaaaccttccttggatcttaattacccttcttttatagcttttttcaatgctggaaattcttcttcaagggccatccaa |
300 |
Q |
| |
|
||| ||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||||| |||||||||| |||||||||||||||| ||| |||| |
|
|
| T |
8974880 |
atcttctactaatgattgttctaaaccttcgttggatctcaattacccttcttttattgctttcttcaatgctgcaaattcttcttcaaggaccacccaa |
8974979 |
T |
|
| Q |
301 |
gaatttcacagaacagttaccaatgttggtgagggacaagccatttatgttgct |
354 |
Q |
| |
|
|||||||| |||||| |||||||||||||| | ||| || | |||||||||||| |
|
|
| T |
8974980 |
gaatttcatagaacaattaccaatgttggtcaaggaaaatcgatttatgttgct |
8975033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 9948271 - 9947938
Alignment:
| Q |
1 |
atatatgataataccaaggaacatatcaaagacattgggaaagataatgaagttgcaactcctcttgcattgggagctggttatgttgatcccaatagag |
100 |
Q |
| |
|
|||| ||||||| | |||||||||||||||||||| || ||| ||| |||||||||||||||||||||| |||||| ||||||||||| | | ||||| |
|
|
| T |
9948271 |
atatttgataatgctaaggaacatatcaaagacatcggagaaggtaacaaagttgcaactcctcttgcattaggagctagttatgttgatactactagag |
9948172 |
T |
|
| Q |
101 |
cacttgaccctggtcttgtttatgatgttggtgtacaagattatgttaatcttctttgtgcacttaacttcacacnnnnnnncatcactacgattacaag |
200 |
Q |
| |
|
| |||||||| |||||| ||||||| ||||||| ||||||||||||||||||||| | || |||||||||||||| |||||||| |||||||| |
|
|
| T |
9948171 |
cgcttgaccccggtcttctttatgacgttggtgcacaagattatgttaatcttctctatggacttaacttcacacagaaacatatcactaccattacaag |
9948072 |
T |
|
| Q |
201 |
atcctctttcaatgattgttctaaaccttccttggatcttaattacccttcttttatagcttttttcaatgctggaaattcttcttcaagggccatccaa |
300 |
Q |
| |
|
|||| | ||||||||||| ||||||||||| |||||| |||| |||||| |||||| ||||| ||||||| |||||||||||||| ||| || ||| |
|
|
| T |
9948071 |
atccacattcaatgattgctctaaaccttcattggatattaaccaccctttttttattgctttcttcaatggtggaaattcttcttggaggagaatacaa |
9947972 |
T |
|
| Q |
301 |
gaatttcacagaacagttaccaatgttggtgagg |
334 |
Q |
| |
|
|| || |||| |||||| |||||||||||||||| |
|
|
| T |
9947971 |
gagttccacaaaacagtgaccaatgttggtgagg |
9947938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 175
Target Start/End: Complemental strand, 9949509 - 9949362
Alignment:
| Q |
24 |
tatcaaagacattgggaaagataatgaagttgcaactcctcttgcattgggagctggttatgttgatcccaatagagcacttgaccctggtcttgtttat |
123 |
Q |
| |
|
||||||| ||||||| | || ||| |||||| ||| || ||||||||||||| ||| ||||||||| |||||| || |||| | ||||||||||| |
|
|
| T |
9949509 |
tatcaaatacattggaagaggtaacaaagttggaaccccacttgcattgggag---gttgtgttgatccttgtagagctct-gaccttagtcttgtttat |
9949414 |
T |
|
| Q |
124 |
gatgttggtgtacaagattatgttaatcttctttgtgcacttaacttcacac |
175 |
Q |
| |
|
|||||||||||| | ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9949413 |
gatgttggtgtaagacattatcttaatcttctttgtgcacttaacttcacac |
9949362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 34962580 - 34962228
Alignment:
| Q |
1 |
atatatgataataccaaggaacatatcaaagacattgggaaagataatgaagttgcaactcctcttgcattgggagctggttatgttgatcccaatagag |
100 |
Q |
| |
|
|||| ||||||| | |||||||| |||||||||||||| | ||| || | || |||| ||| ||||||||||||||||| ||||| |||| ||||||| |
|
|
| T |
34962580 |
atatttgataattctaaggaacaaatcaaagacattggaacagacaaagcag---caacaccttttgcattgggagctggtcatgttaatcctaatagag |
34962484 |
T |
|
| Q |
101 |
cacttgaccctggtcttgtttatgatgttggtgtacaagattatgttaatcttctttgtgcacttaacttcacacnnnnnnncatcactacgattacaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | | ||| ||||||||| || ||||| |
|
|
| T |
34962483 |
cacttgaccctggtcttgtttatgatgttggtgtacaagattatgtgaatcttctttgtgcacttaaatactcacaaaaaaacatcactaccatcacaag |
34962384 |
T |
|
| Q |
201 |
atcctctttcaatgattgttctaaaccttccttggatcttaattacccttcttttatagcttttttcaatgctggaaattcttcttcaagggccatccaa |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||| | || ||| |
|
|
| T |
34962383 |
atcctcttccaatgattgttctaaaccttccttggatcttaactacccttcttttattgcttttttcaatgatggaaattcttcttcaaggccgatacaa |
34962284 |
T |
|
| Q |
301 |
gaatttcacagaacagttaccaatgttggtgagggacaagccatttatgttgctag |
356 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
34962283 |
gaatttcgtagaacagttaccaatgttggtgacggacaagcaatttatgttgctag |
34962228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 351
Target Start/End: Original strand, 34961714 - 34961753
Alignment:
| Q |
312 |
aacagttaccaatgttggtgagggacaagccatttatgtt |
351 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
34961714 |
aacagttaccaatgttggggagggacaagcaatttatgtt |
34961753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 10 - 333
Target Start/End: Complemental strand, 21686954 - 21686634
Alignment:
| Q |
10 |
aataccaaggaacatatcaaagacattgggaaagataatgaagttgcaactcctcttgcattgggagctggttatgttgatcccaatagagcacttgacc |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||| || | ||| || ||||||||| ||||||||||||||||| || || | || |||||||||||||| | |
|
|
| T |
21686954 |
aatactaaggaacatatcaaagacattggaaatggtaacagagcagcaactccttttgcattgggagctggtcatattaaccctaatagagcacttgatc |
21686855 |
T |
|
| Q |
110 |
ctggtcttgtttatgatgttggtgtacaagattatgttaatcttctttgtgcacttaacttcacacnnnnnnncatcactacgattacaagatcctcttt |
209 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||| ||||| | | ||||||||||| ||||| |
|
|
| T |
21686854 |
ctggtcttgtttatgatatcggtgtacaagattatattaatcttctttgtgcacttaacttcacacaaaaaaacatcagtgccattacaagatcttcttt |
21686755 |
T |
|
| Q |
210 |
caatgattgttctaaaccttccttggatcttaattacccttcttttatagcttttttcaatgctggaaattcttcttcaagggccatccaagaatttcac |
309 |
Q |
| |
|
||||||||| |||||||||||||| |||||||| |||||||||||||| ||||| | ||||||| | || |||||||||| | | | ||||||||| |
|
|
| T |
21686754 |
caatgattgctctaaaccttccttagatcttaactacccttcttttattgctttctccaatgctcgtaa---ttcttcaaggacaacaaatgaatttcac |
21686658 |
T |
|
| Q |
310 |
agaacagttaccaatgttggtgag |
333 |
Q |
| |
|
||||||||||| |||||||||||| |
|
|
| T |
21686657 |
agaacagttacaaatgttggtgag |
21686634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 270
Target Start/End: Original strand, 49008517 - 49008698
Alignment:
| Q |
89 |
atcccaatagagcacttgaccctggtcttgtttatgatgttggtgtacaagattatgttaatcttctttgtgcacttaacttcacacnnnnnnncatcac |
188 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||| || |||||||||||| |||||||| |||||| | |||||||| | ||| | |
|
|
| T |
49008517 |
atcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatgtgcattaaacttcactcagaagaatatcgc |
49008616 |
T |
|
| Q |
189 |
tacgattacaagatcctctttcaatgattgttctaaaccttccttggatcttaattacccttcttttatagcttttttcaat |
270 |
Q |
| |
|
| || || ||||| ||||| || |||||||||| ||||| ||||| |||||||||||||||||||| | ||||||||| |
|
|
| T |
49008617 |
agccatcacgagatcgtcttttaacaattgttctaacccttctttggaccttaattacccttcttttatttcctttttcaat |
49008698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 265
Target Start/End: Original strand, 30100333 - 30100372
Alignment:
| Q |
226 |
ccttccttggatcttaattacccttcttttatagcttttt |
265 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
30100333 |
ccttctttggatcttaattacccttcatttatagcttttt |
30100372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 263
Target Start/End: Complemental strand, 30090583 - 30090546
Alignment:
| Q |
226 |
ccttccttggatcttaattacccttcttttatagcttt |
263 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
30090583 |
ccttctttggatcttaattacccttcatttatagcttt |
30090546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 263
Target Start/End: Complemental strand, 30087330 - 30087294
Alignment:
| Q |
227 |
cttccttggatcttaattacccttcttttatagcttt |
263 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
30087330 |
cttctttggatcttaattacccttcatttatagcttt |
30087294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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