View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7843_low_7 (Length: 353)
Name: NF7843_low_7
Description: NF7843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7843_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 17 - 338
Target Start/End: Original strand, 29217900 - 29218221
Alignment:
| Q |
17 |
aggaaatggaaataatctaccaacaaagcaagcagtggttgatttatacaaatcaaaaggaatcggtaaaatccgtatatacaatccagacaaaggtata |
116 |
Q |
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| T |
29217900 |
aggaaatggaaataatctaccaacaaagaaagcagtggttgatttatacaaatcaaaaggaatcggtaaaatccgtatatacaatccagacgaaggtata |
29217999 |
T |
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| Q |
117 |
ctccaagcccttagaggttcaaacatagaagtgatcctcggtgtcccaaacgacgttctcaaatcactcacaaatgctcaaactgcctcggattgggtca |
216 |
Q |
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| T |
29218000 |
ctccaagcccttagaagttcaaacatagaagtgatcctcggtgtcccaaacaacgttctcaaatcactcacaaatgctcaaaccgcctcggattgggtca |
29218099 |
T |
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| Q |
217 |
acaaatatgtaaaagcatactcaaacgtcaaaatcaaatacattgccgttggcaatgaagttcacccgggttcagccgaatcaagctcagttcttcctgc |
316 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29218100 |
acaaatatgtaaaagcatactcaatcgtcaaaatcaaatacattgccgttggcaatgaagttcacccgggttcagccgaatcaagttcagttcttcctgc |
29218199 |
T |
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| Q |
317 |
aatgcaaaacattcaaaaagca |
338 |
Q |
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| T |
29218200 |
aatgcaaaacattcaaaaagca |
29218221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 160
Target Start/End: Original strand, 29250678 - 29250811
Alignment:
| Q |
27 |
aataatctaccaacaaagcaagcagtggttgatttatacaaatcaaaaggaatcggtaaaatccgtatatacaatccagacaaaggtatactccaagccc |
126 |
Q |
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| T |
29250678 |
aataatctaccatcaaagcaagaagttgtagatttatataaatcaaaaggcattggcaaaatgcgtatatactacccagatcaagaagtcctacaagccc |
29250777 |
T |
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| Q |
127 |
ttagaggttcaaacatagaagtgatcctcggtgt |
160 |
Q |
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| T |
29250778 |
ttagaggttctaacattgaattgatccttggtgt |
29250811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 29225318 - 29225355
Alignment:
| Q |
117 |
ctccaagcccttagaggttcaaacatagaagtgatcct |
154 |
Q |
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| T |
29225318 |
ctccaagcccttagaggttccaacatagaattgatcct |
29225355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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