View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7844_high_5 (Length: 460)
Name: NF7844_high_5
Description: NF7844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7844_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 16424784 - 16424338
Alignment:
| Q |
1 |
atatcaacctaattaaattactcttgttaaaaacataaacaagcatgcaac---taagaactttttaaatattgaatagtataactccttaattattaac |
97 |
Q |
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| T |
16424784 |
atatcaacctaattaaattactcttgttaaaaacataaacaagcatgcaacaactaagaactttttaaatattgaatagtataactccttatttattaac |
16424685 |
T |
|
| Q |
98 |
atatagctagagttgcaatactttaattaggcagtgtaatcaatattatagaaccatcttgcatttccccatgtaatttgcatggctctaatcaacaatt |
197 |
Q |
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| T |
16424684 |
ctatagctagagttgcaaaactttaattagacagtgtaatcaatattatagaatcatcttgcattttcccatgtaatttgcatggctccaatcaacaatt |
16424585 |
T |
|
| Q |
198 |
tatatcataaccccaacaacattgagaaagaacctaccagtggttgaaatgggtaaatgtttaattcactcttcacctttcttttccattaaaactttga |
297 |
Q |
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| T |
16424584 |
tatatcataaccccaacaacattgagaaagaacctaccggtggttgaaatgggtaaatgtttaattcactcttcacctttcttttccattaaaactttga |
16424485 |
T |
|
| Q |
298 |
tgcatacaacacccacattaatggcgcatgtttttggtttatttcaagacaattaattaatcacacaccctaattaattgagataacctttataatatga |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
16424484 |
tgcatacaacacccacattaatggcgcatgtttttggtttatttcaaaacaattaattaatcacacaccctaattaattgagataacttttataatatga |
16424385 |
T |
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| Q |
398 |
tgaatatacacaacctctcatggtactacctgattataactttaaac |
444 |
Q |
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|||||| ||||||| |||||| ||||||||||||||||||||||||| |
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| T |
16424384 |
tgaatacacacaacttctcattgtactacctgattataactttaaac |
16424338 |
T |
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