View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7844_low_3 (Length: 594)
Name: NF7844_low_3
Description: NF7844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7844_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 5 - 577
Target Start/End: Original strand, 32908105 - 32908678
Alignment:
| Q |
5 |
gtttggtgttaatgcttctatgatggacacccatgaaatcaactcttcctccagccagttttttgagtttcttcctttaagaaattaaagtagccaaatt |
104 |
Q |
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| T |
32908105 |
gttttgtgttaatgcttctatgatggacactcatgaaatcaactcttcctccagccagttttttgagtttcttcctttaagaaattaaagtagccaaatc |
32908204 |
T |
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| Q |
105 |
catgccatatacatgcggannnnnnnnnnnnn-aagaagtcaaattagcgaccaaaattggcagatatacatgcggttgttatatattaagccaattaat |
203 |
Q |
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| T |
32908205 |
catgccatatacatgcggattttttttttttttaagaagtcaaattagccaccaaaattggcagatatacatgcggttgttatatattaagccaattaat |
32908304 |
T |
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| Q |
204 |
taattggatgtgcatgtaatgaataatacattttttgtttggatttgcaaattacttttggttttactttctctcttgagattgagttgatgatgaacct |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32908305 |
taattggatgtgcatgtaatgaataatacattttttgtttggatttgcaaattacttttggttttactttctctcttgagattgagttggtgatgaacct |
32908404 |
T |
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| Q |
304 |
ggtgatgcatgttagcattgtaagtgttgttgtacatttgattgaacctaatgttgtcttgttcatactctacttttacgtggatagcagtgtctctgat |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32908405 |
ggtgatgcatgttagcattgtaagtgttgttgtacatttgattgaacctaatgttgtcttgttcatactctacttttacgtggatagcagtgtctctgat |
32908504 |
T |
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| Q |
404 |
ctctcaatcacacacacactcactcttatatcacgtgtgaaaatgtcaaccatgtccttaatttaggtcagcaagaatacaaatttagaaaatgaaaatt |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32908505 |
ctctcaatcacacacacactcactcttatatcacgtgtgaaaatgtcaaccatgtccttaatttaggtcagcaagaatacaaatttagaaaatgaaaatt |
32908604 |
T |
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| Q |
504 |
ttaagcaaggaacagcttgtaccgacaaactttatatggtacacatatgcctcctcttagttattgttgaaatt |
577 |
Q |
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| T |
32908605 |
ttaagcaaggaacagcttgtaccgacaaactttatatggtacacatatgcctcctcttagttattgttgaaatt |
32908678 |
T |
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