View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7844_low_5 (Length: 516)
Name: NF7844_low_5
Description: NF7844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7844_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 37560797 - 37561294
Alignment:
| Q |
1 |
acttcttcaacaacaaaattcatctattaatttattgttatatccaaacaataatacctgcattactgaaccaaaaccttacatcacacattcaacaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37560797 |
acttcttcaacaacaaaattcatctattaatttattgttatatccaaacaataatacctgcattactgaaccaaaaccttacataacacattcaacaaat |
37560896 |
T |
|
| Q |
101 |
tcaaccacattcgtttcattggtttttcgcctttaattgcactttttcatcacacaataatttattggcagttacaacattttccacaagttcaacgaat |
200 |
Q |
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| T |
37560897 |
tcaaccacattcgtttcattggtttttcgcctttaattgcactttttcatcacacaataatttataggcagttacaacattttccacaagttcaacgaat |
37560996 |
T |
|
| Q |
201 |
atttgttacaataactttaaacctaaaggtgcatgcatttgttattgatagagttattaaaaggaaaattaaagttcaatgtgatgaaaattagattatg |
300 |
Q |
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| T |
37560997 |
tattgttacactaactttaaacctaaaggtgcatgcatttgttattgatagagttattaaaaggaaaattaaagttcaatgtgatgaaaattagattatg |
37561096 |
T |
|
| Q |
301 |
caattttattgatgaatttcaaaggaagaagggaaatgaaaaaaccttgttatatcgttgtttatgttattcttctttgtgctttagaaaaaggatgctc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37561097 |
caattttattgatgaatttcaaaggaagaagggaaatgaaaaaaccttgttatatcgttgtttatgttattcttctttgtgctttagaaaaaggatgctc |
37561196 |
T |
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| Q |
401 |
agagggcaagaggtggaaacatgatgagttttttagagatcatattggagaaaaggtatcttataagttatttatttgtaattttgattagtattctc |
498 |
Q |
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| T |
37561197 |
agagggcaagaggtggaaacatgatgagttttttagagatcatattggagaaaaggtatcttataagttatttatttgtaattttgattagtattctc |
37561294 |
T |
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