View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7844_low_7 (Length: 453)
Name: NF7844_low_7
Description: NF7844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7844_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 30396889 - 30397323
Alignment:
| Q |
1 |
acttacttttctggatatttaagtgacaaccaacaatataatccaggtattgtataatgtctactttgctaataatcaatatatactgttctttccttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30396889 |
acttacttttctggatatttaagtgacaaccaacaatataatccaggtattgtataatgtctactttgctaataatcaatatatactgttctttccttgt |
30396988 |
T |
|
| Q |
101 |
tagccaaatatttggtgtagctttccaacaannnnnnnnaa-aataaattttagatttctacaattggaatagagtcaaggttaggtattgtgacggatc |
199 |
Q |
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| T |
30396989 |
tagccaaatatttggtgtagctttccaataatttttttttttaataaattttagatttctacaattggaatagagtcaaggttaggtattgtgacggatc |
30397088 |
T |
|
| Q |
200 |
atcatttaccggcgatgttgaagaagttgatccagtaagttttgcaaaatccgaagaagttaaaatttaaatttcaaggaaaattggagtcatatttata |
299 |
Q |
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| T |
30397089 |
atcatttaccggcgatgttgaagaagttgatccagtaagttttgcaaaatccgaagaagttaaaatttaaatttcaaggaaaattggagtcatatttata |
30397188 |
T |
|
| Q |
300 |
ctatgatctaatgatattcttataatatgttacataaatcagacgacgaagttatactacagaggcgcaaggattttttctgctgtaatggaagagttac |
399 |
Q |
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| T |
30397189 |
ctatgatctaatgatattcttataatatgttacataaatcagacgacgaagttatactacagaggtgcaaggattttttctgctgtaatggaagagttac |
30397288 |
T |
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| Q |
400 |
tagcaaaaggaatggatcatgctgaaaatgtacat |
434 |
Q |
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| T |
30397289 |
tagcaaaaggaatggatcatgctgaaaatgtacat |
30397323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 152 - 241
Target Start/End: Original strand, 30386389 - 30386478
Alignment:
| Q |
152 |
agatttctacaattggaatagagtcaaggttaggtattgtgacggatcatcatttaccggcgatgttgaagaagttgatccagtaagttt |
241 |
Q |
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| T |
30386389 |
agatttctataattggaacagaatcaaggttaggtattgtgatggttcttcatttaccggcgatgttgaagctgtcgatccagtaagttt |
30386478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 431
Target Start/End: Original strand, 30386576 - 30386652
Alignment:
| Q |
355 |
actacagaggcgcaaggattttttctgctgtaatggaagagttactagcaaaaggaatggatcatgctgaaaatgta |
431 |
Q |
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| T |
30386576 |
actacagaggaggaaggatttttgttgctgtcattgaggatttactagcaaaaggaatgaaaaatgctaaaaatgta |
30386652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 146 - 242
Target Start/End: Complemental strand, 10797851 - 10797755
Alignment:
| Q |
146 |
aattttagatttctacaattggaatagagtcaaggttaggtattgtgacggatcatcatttaccggcgatgttgaagaagttgatccagtaagtttt |
242 |
Q |
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|||| ||||||||||||||||||| ||| |||||||||| ||||||||||| || || |||||||| ||||| |||| ||| |||||||||||||| |
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| T |
10797851 |
aattgtagatttctacaattggaacagaatcaaggttagatattgtgacggttcgtcttttaccggtgatgtcgaagcagtcaatccagtaagtttt |
10797755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 146 - 242
Target Start/End: Original strand, 18762452 - 18762548
Alignment:
| Q |
146 |
aattttagatttctacaattggaatagagtcaaggttaggtattgtgacggatcatcatttaccggcgatgttgaagaagttgatccagtaagtttt |
242 |
Q |
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|||| ||||||| ||||||||||| ||| ||||| |||| |||||||| || ||||| ||||| || ||||| |||| ||| ||||||||||||||| |
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| T |
18762452 |
aattgtagatttttacaattggaacagaatcaagattagatattgtgatggttcatcttttactggtgatgtggaagcagtcgatccagtaagtttt |
18762548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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