View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7844_low_9 (Length: 317)
Name: NF7844_low_9
Description: NF7844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7844_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 36971197 - 36971500
Alignment:
| Q |
1 |
cctcctgtacaagcttttcttcttcatgtccatctgattcaaggcataaatcagacccggatatagtaggattgtcctcatgtctactatcacctctatc |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36971197 |
cctcctgtacaagcttttgttcttcatgtccatctggttcaaggcataaatcagacccggatatagtaggattgtcctcatgtctactatcacctctatc |
36971296 |
T |
|
| Q |
101 |
ttgtgcttcctcggaaacagttcctactaccgagtctctttcccctccatcgacttcaacaagcttttccatgcagtcgaattctcctttggtttcaact |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36971297 |
ttgtgcttcctcagaaacagttcctactaccgagtctctttcccctccatcgacttcaacaagcttttccatgcagtcgaattctcctttggtttcaact |
36971396 |
T |
|
| Q |
201 |
cttccatgttcataacatgaaagagttcttttaaggtcatccttctcttgtatggctctttcatacaaactcatcaacttttcgttttcttcattgatgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
36971397 |
cttccatgttcataacatgaaagagttcttttaagatcatccttctcttgcatggctctttcatacaaactcatcaacttttcgttttcttcattgattt |
36971496 |
T |
|
| Q |
301 |
ccat |
304 |
Q |
| |
|
|||| |
|
|
| T |
36971497 |
ccat |
36971500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University