View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7847_low_1 (Length: 411)
Name: NF7847_low_1
Description: NF7847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7847_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 10303235 - 10303506
Alignment:
| Q |
1 |
gattaatttcctcagttgcgcgctgaagatacccgatttacgcaccaaaattgtggtattgaaataatctagaagtatataggccaagaattatcctcag |
100 |
Q |
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| T |
10303235 |
gattaatttcctcagttgcatgctgaagatgctcggtttacgcaccaaaattgtaatattgaaataatctagaagtatataggccatgaattatcctcag |
10303334 |
T |
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| Q |
101 |
caagaatacgcatactattgaaactctgattataaggtggacaaatggcatctaattcttatcttctataaccaataatcagaggaaagaaaggttatca |
200 |
Q |
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| T |
10303335 |
caagaatacgcatactattgaaactctgattataaggtggacaaatggcatctaattcttatcttctataaccaataatcataggaaagaaaggttatca |
10303434 |
T |
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| Q |
201 |
gtgaaagttctttgggtatcttcaaagtcgtttacaacttcatttggttgattttaaggctaattaggtccg |
272 |
Q |
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| T |
10303435 |
gtgaaagttctttgggtatcttcaaagtcgtttacaacttcatttggttgattttaaggctaattaggtccg |
10303506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 394
Target Start/End: Original strand, 10303585 - 10303628
Alignment:
| Q |
351 |
gtcacttgattgactccctatctaattgatatcttgtgagaaat |
394 |
Q |
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| T |
10303585 |
gtcacttgattgactccatatctaattgatatcttgtgagaaat |
10303628 |
T |
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