View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7847_low_3 (Length: 299)
Name: NF7847_low_3
Description: NF7847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7847_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 36134837 - 36135122
Alignment:
| Q |
1 |
agcgatttctaatatcaatgcaaaattttccaattcaatatgtgtatttgtgtactttgtgattgagatgagccagtagcaagaatgaagaatgtttgat |
100 |
Q |
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| T |
36134837 |
agcgatttctaatatcaatgtaaaattttcaaattcaatatgtgtatttgtgtactttgtgattgagatgagccagtagcaagaatgaagaatgtttgat |
36134936 |
T |
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| Q |
101 |
gatgtagcttgttttgaacaatggaatgtgttaatccattatatattcacnnnnnnngggctatattgtcaaaaatgttctcttgctcgaacaaatttct |
200 |
Q |
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| T |
36134937 |
gatgtagcttgttttgaacaatggaatgtgttaatccattatatattcactttttttgggctatattgtcaaaaatgttctcttgctcgaacaaatttct |
36135036 |
T |
|
| Q |
201 |
agatgaactgcttagaaataccttactctaatgggtgtttcaatatttaagagagaagaaaaatagatagagtgatgtgataaatg |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36135037 |
agatgaactgcttagaaataccttactctaatgggtgtttcaatatttaagagagaagaaaaatagatagagtgatgtgataaatg |
36135122 |
T |
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