View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7848_high_5 (Length: 295)
Name: NF7848_high_5
Description: NF7848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7848_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 80 - 279
Target Start/End: Complemental strand, 10084289 - 10084107
Alignment:
| Q |
80 |
aaaaagattctataaaaccgttcagatttatttataatacgagtcaaatcaaatat--cactttaactgcactccttgatttttgcttcctcaactatct |
177 |
Q |
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| T |
10084289 |
aaaaagattccataaaaccgtttagatttatttataatacaaatcaaatcaaatatatcactttaactgcactccttgatttttgcttcctcaactatct |
10084190 |
T |
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| Q |
178 |
ctcacttccacgtttcattctcttctcatttcattcaactctttacatttcacataaaataggtcaggtcattcctcacctgcttcagttgaagttttct |
277 |
Q |
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| T |
10084189 |
ctcacttccacgtttcattctcttctcat-------------------ttcacataaaataggtcaggtcatccctcacctgcttcagttgaagttttct |
10084109 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 22269042 - 22269078
Alignment:
| Q |
123 |
tcaaatcaaatatcactttaactgcactccttgattt |
159 |
Q |
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| T |
22269042 |
tcaaatcaaatattactttaactgcactccttaattt |
22269078 |
T |
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