View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7848_low_10 (Length: 280)
Name: NF7848_low_10
Description: NF7848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7848_low_10 |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0208 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 7322356 - 7322077
Alignment:
| Q |
1 |
agccttaagcttcataatttgtgacacttcaagtaaagtagtgtttgcaattattgaagttgacaaattgttgccaaataatagataatcaagtatttgc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
7322356 |
agccttaagcttcataatttgtgacacttcaagtaaagtagtgtttgcaattattgaagttgataaatcgttgccaaataatagataatcaagtatttgc |
7322257 |
T |
|
| Q |
101 |
gtggtaggatttgtgctacttaaagcagcaaaagcaacagcttttccaacaccagtgttaactaaaaaatgcaaaagtcctgttggaaaaactacaatat |
200 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7322256 |
atggtgggatttgtgctacttaaagcagcaaaaataacagcttttccaacaccagtgttaactaaaaaatgcaaaagtccttttggaaaaactacaatat |
7322157 |
T |
|
| Q |
201 |
caccaggtttaacagttttcaaataaacttttgccggtgtaataaatccagcagttaattggccttcaactatgataagc |
280 |
Q |
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| T |
7322156 |
caccatgtttaacaattttcaaataaacttttgccggtgtaataaatccagcagttaattggctttcaactatgataagc |
7322077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 7320033 - 7319754
Alignment:
| Q |
1 |
agccttaagcttcataatttgtgacacttcaagtaaagtagtgtttgcaattattgaagttgacaaattgttgccaaataatagataatcaagtatttgc |
100 |
Q |
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|||||||||||| |||||||||||||| ||||||||||| | |||||| |||||||||||||| |||| ||||||||||||||||||||||||||||| | |
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| T |
7320033 |
agccttaagcttaataatttgtgacacatcaagtaaagttgggtttgcgattattgaagttgataaatcgttgccaaataatagataatcaagtatttcc |
7319934 |
T |
|
| Q |
101 |
gtggtaggatttgtgctacttaaagcagcaaaagcaacagcttttccaacaccagtgttaactaaaaaatgcaaaagtcctgttggaaaaactacaatat |
200 |
Q |
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| |||| |||| |||||| ||| |||| |||||| ||| ||||||||| ||||||||||| |||||| ||||||||| |||||| ||||| | ||| |
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| T |
7319933 |
attttagggtttgagctactgaaaaaagcagaagcaatagcatttccaacatcagtgttaactccaaaatgtaaaagtccttttggaataactaaactat |
7319834 |
T |
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| Q |
201 |
caccaggtttaacagttttcaaataaacttttgccggtgtaataaatccagcagttaattggccttcaactatgataagc |
280 |
Q |
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|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||| ||||| ||||||| |
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| T |
7319833 |
caccaggtttaacagttttcaaatcaacttttgttggtgtaataaatccagcagttaactggcctttaactacgataagc |
7319754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 132 - 255
Target Start/End: Complemental strand, 7324995 - 7324872
Alignment:
| Q |
132 |
aagcaacagcttttccaacaccagtgttaactaaaaaatgcaaaagtcctgttggaaaaactacaatatcaccaggtttaacagttttcaaataaacttt |
231 |
Q |
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|||||||||| |||||| ||||||||||| | ||||||||||||||||||||||||||| || ||||||||| |||| |||||||| | ||||||| |
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| T |
7324995 |
aagcaacagcatttccaggaccagtgttaagaataaaatgcaaaagtcctgttggaaaaacccaaacatcaccaggattaagagttttcataaaaacttt |
7324896 |
T |
|
| Q |
232 |
tgccggtgtaataaatccagcagt |
255 |
Q |
| |
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| ||||| |||||||||||||| |
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| T |
7324895 |
tttaggtgtgataaatccagcagt |
7324872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 2344975 - 2345205
Alignment:
| Q |
1 |
agccttaagcttcataatttgtgacacttcaagtaaagtagtgtttgcaattattgaagttgacaaattgttgccaaataatagataatcaagtatttgc |
100 |
Q |
| |
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|||||| || |||| ||| |||||||| |||||||||||||| | ||||||||| |||||||| |||||||| |||||||||||| |||||||||||| |
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| T |
2344975 |
agccttcagtttcagaatctgtgacacatcaagtaaagtagtctctgcaattatggaagttgataaattgtttccaaataatagagtatcaagtatttgt |
2345074 |
T |
|
| Q |
101 |
gtggtaggatttgtgctacttaaagcagcaaaagcaacagcttttccaacaccagtgttaactaaaaaatgcaaaagtcctgttggaaaaactacaatat |
200 |
Q |
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||| ||||||||| |||||| |||||| ||||||||||||||||||||||||||| ||| |||| ||||||||| |||||| |||||||||||| || || |
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| T |
2345075 |
gtgctaggatttgagctactaaaagcaacaaaagcaacagcttttccaacaccagagttcactacaaaatgcaatagtccttttggaaaaactataagat |
2345174 |
T |
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| Q |
201 |
caccaggtttaacagttttcaaataaacttt |
231 |
Q |
| |
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|||||||||||| ||||||| |||||||||| |
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| T |
2345175 |
caccaggtttaatagttttcgaataaacttt |
2345205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 6521845 - 6521644
Alignment:
| Q |
1 |
agccttaagcttcataatttgtgacacttcaagtaaagtagtgtttgcaattattgaagttgacaaattgttgccaaataatagataatcaagtatttgc |
100 |
Q |
| |
|
||||||||||||| | || ||||| || ||||| | |||||| ||||||||||| ||||| | || ||||| ||||| | || | ||||||| | || |
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| T |
6521845 |
agccttaagcttcttgatctgtgaaacatcaagaagagtagtctttgcaattatagaagtaggtaacttgtttccaaacagtacagaatcaagaaactga |
6521746 |
T |
|
| Q |
101 |
gtggtaggatttgtgctacttaaagcagcaaaagcaacagcttttccaacaccagtgttaactaaaaaatgcaaaagtcctgttggaaaaactacaatat |
200 |
Q |
| |
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| |||| |||| |||||| ||| ||||||||||| ||||| |||| |||||| |||||||| ||||||||| |||||| |||||||||| | ||||| |
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| T |
6521745 |
aagctaggctttgagctactataagtagcaaaagcaatagcttctccagcaccagagttaactacaaaatgcaatagtccttttggaaaaaccataatat |
6521646 |
T |
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| Q |
201 |
ca |
202 |
Q |
| |
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|| |
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| T |
6521645 |
ca |
6521644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 210
Target Start/End: Original strand, 19623490 - 19623629
Alignment:
| Q |
71 |
ttgccaaataatagataatcaagtatttgcgtggtaggatttgtgctacttaaagcagcaaaagcaacagcttttccaacaccagtgttaactaaaaaat |
170 |
Q |
| |
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|||||||| || ||| |||||||||||| || ||||||||| ||||| |||||| |||||||| ||||||||| ||||| |||||| ||||| |
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| T |
19623490 |
ttgccaaacaaaagaatatcaagtatttgagtagtaggattttcactactaaaagcaccaaaagcagtagcttttcccttaccagaattaactgcaaaat |
19623589 |
T |
|
| Q |
171 |
gcaaaagtcctgttggaaaaactacaatatcaccaggttt |
210 |
Q |
| |
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|||| | |||| ||||||||| | ||||||||| ||||| |
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| T |
19623590 |
gcaacattccttgtggaaaaacaataatatcacctggttt |
19623629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 191
Target Start/End: Original strand, 10570205 - 10570393
Alignment:
| Q |
3 |
ccttaagcttcataatttgtgacacttcaagtaaagtagtgtttgcaattattgaagttgacaaattgttgccaaataatagataatcaagtatttgcgt |
102 |
Q |
| |
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||||||||||| | || ||||| || ||||| | |||||| ||||||||||| ||||| | || ||||| ||||| | || ||||||||| | || |
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| T |
10570205 |
ccttaagcttcttgatctgtgaaacatcaagaagagtagtctttgcaattatagaagtaggtaacttgtttccaaacagtaaataatcaagaaactgaaa |
10570304 |
T |
|
| Q |
103 |
ggtaggatttgtgctacttaaagcagcaaaagcaacagcttttccaacaccagtgttaactaaaaaatgcaaaagtcctgttggaaaaa |
191 |
Q |
| |
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| |||| |||| |||||| ||| ||||||||||| ||||| |||| ||| || |||||||| ||||||||| |||||| ||||||||| |
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| T |
10570305 |
gctaggctttgagctactataagtagcaaaagcaatagcttctccagcacaagagttaactacaaaatgcaatagtccttttggaaaaa |
10570393 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0208 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0208
Description:
Target: scaffold0208; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 202
Target Start/End: Complemental strand, 15745 - 15648
Alignment:
| Q |
105 |
taggatttgtgctacttaaagcagcaaaagcaacagcttttccaacaccagtgttaactaaaaaatgcaaaagtcctgttggaaaaactacaatatca |
202 |
Q |
| |
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|||| |||| |||||| ||| ||||||||||| ||||| |||| ||| || |||||||| ||||||||| |||||| |||||||||| | ||||||| |
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| T |
15745 |
taggctttgagctactataagtagcaaaagcaatagcttctccagcacgagagttaactacaaaatgcaatagtccttttggaaaaaccataatatca |
15648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 32984742 - 32984538
Alignment:
| Q |
1 |
agccttaagcttcataatttgtgacacttcaagtaaagtagtgtttgcaattattgaagttgacaaattgttgccaaataatagataatcaagtatttgc |
100 |
Q |
| |
|
||||||||||||| |||||||||| || ||||| | |||||| | ||||||||| ||||| | || || || | |||||||| ||||||||| | || |
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| T |
32984742 |
agccttaagcttcttaatttgtgaaacatcaagaagagtagtttgtgcaattatagaagtaggtaagttatttctaaataatacataatcaagaaactga |
32984643 |
T |
|
| Q |
101 |
gtggtaggatttgtgctacttaaagcagcaaaagcaacagcttttccaacaccagtgttaactaaaaaatgcaaaagtcctgttggaaaaactacaatat |
200 |
Q |
| |
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| |||| |||| |||||| ||| ||||||||||| ||||| | || |||| | |||||| | |||||||| ||||| | |||||||| | ||||| |
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| T |
32984642 |
aagctaggctttgagctactataagtagcaaaagcaatagcttcttcagcaccggagttaacaacaaaatgcattagtcccttaggaaaaaccataatat |
32984543 |
T |
|
| Q |
201 |
cacca |
205 |
Q |
| |
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||||| |
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|
| T |
32984542 |
cacca |
32984538 |
T |
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