View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7848_low_2 (Length: 427)
Name: NF7848_low_2
Description: NF7848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7848_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 196 - 412
Target Start/End: Original strand, 45039968 - 45040184
Alignment:
| Q |
196 |
tagggtgaaagtgagagtgtccaccaccacggccgccaacatcatctgcaacaatgagtctagcatgttttccagcttttgttatttcagtcaaaagctt |
295 |
Q |
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| T |
45039968 |
tagggtgaaagtgagagtgtccaccaccacggccgccaacatcatctgcaacaatgagtctagcatgttttccagcttttgttatttcagtcaagagctt |
45040067 |
T |
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| Q |
296 |
atttgaatcaattgccccagaaatttgaatgatacatcttcaaatccaattccaataatgattaagtgtaagtaaagattaatcactagacttgtagaga |
395 |
Q |
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| T |
45040068 |
atttggatcaattgccccagaaattcgaatgatacatcttcaaatccaattccaataatgattaagtgtaagtaaagattaatcactagatttgtagaga |
45040167 |
T |
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| Q |
396 |
ctaattatagaaaataa |
412 |
Q |
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| T |
45040168 |
ctaattatagaaaataa |
45040184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 9 - 198
Target Start/End: Original strand, 45039750 - 45039939
Alignment:
| Q |
9 |
gaaatgaaaaatgcagaaagcaaaaattcagataagctataatgtaaaacttataccaacaattggtcacatattaacgcaattgttatttgtatcattg |
108 |
Q |
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| T |
45039750 |
gaaatggaaaatgcagaaagcaaaaattcagataagctataatgtaaaacttataccaacaattggtcacatattaacgcaattgttatttgtatcattg |
45039849 |
T |
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| Q |
109 |
tagtgttggagttgctgatgttccaattgttctggtgctgatggtggaggaagtgctaaaacaccgctagatcgacggccttcattatag |
198 |
Q |
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| T |
45039850 |
tagtgttggagttgctgatgttccaattgttctggtgctgatggtggaggaagtgctataacaccgctagatcgacggccttcattatag |
45039939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 11 - 169
Target Start/End: Original strand, 45043270 - 45043428
Alignment:
| Q |
11 |
aatgaaaaatgcagaaagcaaaaattcagataagctataatgtaaaacttataccaa-caattggtcacatattaacgcaattgttatttgtatcattgt |
109 |
Q |
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| T |
45043270 |
aatggaaaatgcagaac-caaaagttcagataaactataatgtaaaacttatactaatcaattggtcacataataacacaattgttatttgtatcattgt |
45043368 |
T |
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| Q |
110 |
agtgttggagttgctgatgttccaattgttctggtgctgatggtggaggaagtgctaaaa |
169 |
Q |
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| T |
45043369 |
agtgttggagttgttgatgttgcaattgttctgatgcagatggtggaggcagtgctaaaa |
45043428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 227 - 330
Target Start/End: Original strand, 45043697 - 45043800
Alignment:
| Q |
227 |
gccgccaacatcatctgcaacaatgagtctagcatgttttccagcttttgttatttcagtcaaaagcttatttgaatcaattgccccagaaatttgaatg |
326 |
Q |
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|||||||||| ||| ||| |||||||| ||||||||| ||||||||||||||||| |||||||||||| ||| ||| ||||| ||||||||| |||| |
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| T |
45043697 |
gccgccaacaacattagcagcaatgagttcagcatgtttcccagcttttgttatttcggtcaaaagcttacttggatctattgctccagaaattcgaata |
45043796 |
T |
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| Q |
327 |
atac |
330 |
Q |
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|||| |
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| T |
45043797 |
atac |
45043800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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