View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7848_low_4 (Length: 425)
Name: NF7848_low_4
Description: NF7848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7848_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 120 - 410
Target Start/End: Complemental strand, 3585367 - 3585078
Alignment:
| Q |
120 |
gtgaagtgtaaaatttgatgatggcagttgaagaagaagaaggaggcacgtgtcagttgtatgttacacaatcttggtcaatattgtactaaagtttcca |
219 |
Q |
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| T |
3585367 |
gtgaagtgtaaaatttgatgatggcagttgaagaagaagaaggaggcacgtgtcagttgtatgttacacaatcttggtcaatattgtactaaagtttcca |
3585268 |
T |
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| Q |
220 |
tggatttcgttcttacgcaacaacttaattaaacttcaagtaaagtgnnnnnnnnnnnnnnnnnnataagcaagtaaactgtttattaatagctatacnn |
319 |
Q |
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| T |
3585267 |
tggatttcgttcttacgcaacaacttaattaaacttcaagtaaagtgttttattttgttttttttataagcaagtaaactgtttattaatagctatactt |
3585168 |
T |
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| Q |
320 |
nnnnngataaaattattaattcctatactatacttattaagttaatttgtcaaaataaatcagtgttactaagttttttgaggtacaaagt |
410 |
Q |
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| T |
3585167 |
tttttgataaaattattaattcctatactatactta-taagttaatttgtcaaaataaatcagtgttactaagttttttgaggtacaaagt |
3585078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 3585471 - 3585436
Alignment:
| Q |
16 |
atgaaagaacgtgtaccttgttattgatgatgttgt |
51 |
Q |
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| T |
3585471 |
atgaaagaacgtgtaccttgttattgatgatgttgt |
3585436 |
T |
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