View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7848_low_5 (Length: 362)
Name: NF7848_low_5
Description: NF7848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7848_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 37212068 - 37212411
Alignment:
| Q |
1 |
taacatgtctacaataattgcttgttactgtttaaccaactaggctatgaaataactcttgtctcttgttactgtatcttattttgttgaatgctattta |
100 |
Q |
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| T |
37212068 |
taacatgtctacaataattgcttgttactgtttaaccaactaggctatgaaataactcttgtctcttgttactgtatcttattttgttgaatgctattta |
37212167 |
T |
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| Q |
101 |
ttggttatcttgactcattgaagccaatggttttgtcatgttataaccataacttttccactcaggatcaagatgacatgatttatgttggaacatctaa |
200 |
Q |
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| T |
37212168 |
ttggttatcttgactcattgaagccaatggttttgtcatgttataaccatcacttttccactcaggatcaagatgacatgatttatgttggaacatctaa |
37212267 |
T |
|
| Q |
201 |
tcatgtttcttcaattatatcctcatatagttacttttctagtttattgcttgcatagttgaactttcccttaaagtaatcactagtcaggctcctgtat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
37212268 |
tcatgtttcttcaattatatcctcatatagttacttttctagtttattgcttgcatagttgaactttcccttaaagtagtcagtagtcaggctcctgtat |
37212367 |
T |
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| Q |
301 |
gtgtttgtcaagtcatgtgagttctacattatttgacactcttc |
344 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37212368 |
gtgtttgtcaagttatgtgagttctacattatttgacactcttc |
37212411 |
T |
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