View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7848_low_6 (Length: 350)

Name: NF7848_low_6
Description: NF7848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7848_low_6
NF7848_low_6
[»] chr4 (8 HSPs)
chr4 (17-340)||(38253943-38254268)
chr4 (18-340)||(38214790-38215117)
chr4 (18-340)||(38243680-38244004)
chr4 (18-340)||(38227213-38227537)
chr4 (18-340)||(38248828-38249152)
chr4 (18-328)||(38220844-38221156)
chr4 (151-340)||(38238742-38238931)
chr4 (18-118)||(38238936-38239036)
[»] chr6 (2 HSPs)
chr6 (23-340)||(17434343-17434659)
chr6 (23-340)||(17455443-17455762)
[»] chr7 (1 HSPs)
chr7 (31-176)||(15913043-15913190)
[»] chr2 (5 HSPs)
chr2 (24-104)||(11485033-11485113)
chr2 (24-94)||(11478762-11478832)
chr2 (207-340)||(11485194-11485327)
chr2 (23-93)||(11462185-11462255)
chr2 (207-340)||(11478923-11479056)
[»] chr1 (1 HSPs)
chr1 (209-340)||(21546630-21546761)
[»] scaffold0083 (2 HSPs)
scaffold0083 (209-291)||(47299-47381)
scaffold0083 (18-94)||(47130-47206)


Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 17 - 340
Target Start/End: Complemental strand, 38254268 - 38253943
Alignment:
Q  17 atttccatgctgaagtagttgatgaatctggaaatcctatacctctccatgaaacttatctccatcattgggttgttggaagatatcatcaaagaaaaca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38254268 atttccatgctgaagtagttgatgaatctggaaatcctatacctctccatgaaacttatctccatcattgggttgttggaagatatcatcaaagaaaaca 38254169  T
Q  117 tgttacacaca--gaaaatgatagccacatgatgctacaaaactctgatcatgttcttgtgagaaacagtggcatatgccagggaaattatcttggacaa 214  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38254168 tgttacacacacagaaaatgatagccacatgatgctacaaaactctgatcatgttcttgtgagaaacagtggcatatgccagggaaattatcttggacaa 38254069  T
Q  215 tactttggccttggatccgaaacaagaggaacactgacagatattccggacccttttggtatagaggtaggtaatcctgcagaggttccagaagggtttg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38254068 tactttggccttggatccgaaacaagaggaacactgacagatattccggacccttttggtatagaggtaggtaatcctgcagaggttccagaagggtttg 38253969  T
Q  315 atgagaaatggatggttaatgttcat 340  Q
    ||||||||||||||||||||||||||    
T  38253968 atgagaaatggatggttaatgttcat 38253943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 18 - 340
Target Start/End: Complemental strand, 38215117 - 38214790
Alignment:
Q  18 tttccatgctgaagtagttgatgaatctggaaatcctatacctctccatgaaacttatctccatcattgggttgttggaagatatcatcaaagaaaacat 117  Q
    |||| |||||||||| |||||||||  ||| ||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  38215117 tttcaatgctgaagttgttgatgaagatggtaatcctatacccctccatgaaacttatcttcatcattgggctgttggaagatatcatcaaagaaaacat 38215018  T
Q  118 gttaca--cacagaaaatgatagccacatgatgctacaaaact---ctgatcatgttcttgtgagaaacagtggcatatgccagggaaattatcttggac 212  Q
    ||||||  |||||||||||||||||||| |||||| |||||||   |||||||||||||||||||||||||||||||||| || | ||||    ||  ||    
T  38215017 gttacacacacagaaaatgatagccacaggatgcttcaaaactctgctgatcatgttcttgtgagaaacagtggcatatgtcaagaaaatgtcattccac 38214918  T
Q  213 aatactttggccttggatccgaaacaagaggaacactgacagatattccggacccttttggtatagaggtaggtaatcctgcagaggttccagaagggtt 312  Q
    | |||||||||||||||||||||||| ||||||||   |||||||||||||| ||||||||||||||| |||||||||||| |||| |||||||||||||    
T  38214917 agtactttggccttggatccgaaacacgaggaacagcaacagatattccggatccttttggtatagagataggtaatcctgaagagattccagaagggtt 38214818  T
Q  313 tgatgagaaatggatggttaatgttcat 340  Q
    ||| ||||||||| ||||||||||||||    
T  38214817 tgaggagaaatggttggttaatgttcat 38214790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 340
Target Start/End: Complemental strand, 38244004 - 38243680
Alignment:
Q  18 tttccatgctgaagtagttgatgaatctggaaatcctatacctctccatgaaacttatctccatcattgggttgttggaagatatcatcaaagaaaacat 117  Q
    |||| ||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  38244004 tttcaatgctgaagtagttgatgaagttggtaatcctatacctctccatgaaacttatctccatcattggggtgttggaagatatcatcaaagtaaacat 38243905  T
Q  118 gttacacacagaa--aatgatagccacatgatgctacaaaactctgatcatgttcttgtgagaaacagtggcatatgccagggaaattatcttggacaat 215  Q
    || ||||||| ||  |||||| || | | |||||| ||||  ||| ||  |||    ||||| |||||||||||||| |||||||||  |||||||||||    
T  38243904 gtcacacacacaagaaatgatggcaaaaggatgcttcaaagttctaatattgtgaaagtgaggaacagtggcatatgtcagggaaatactcttggacaat 38243805  T
Q  216 actttggccttggatccgaaacaagaggaacactgacagatattccggacccttttggtatagaggtaggtaatcctgcagaggttccagaagggtttga 315  Q
    |||||||| |||||||||||||| ||||||||   |||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||  ||    
T  38243804 actttggcattggatccgaaacacgaggaacagcaacagatattccggatccttttggtatagagataggtaatcctgcagaggtttcagaagggtccga 38243705  T
Q  316 tgagaaatggatggttaatgttcat 340  Q
     || |||||| || |||||||||||    
T  38243704 ggataaatgggtgcttaatgttcat 38243680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 18 - 340
Target Start/End: Complemental strand, 38227537 - 38227213
Alignment:
Q  18 tttccatgctgaagtagttgatgaatctggaaatcctatacctctccatgaaacttatctccatcattgggttgttggaagatatcatcaaagaaaacat 117  Q
    |||| |||||||||||||||||||  |||| ||||||||||||||||||||||| ||||||||||||||| |||||  |||| || ||||||||||| ||    
T  38227537 tttcaatgctgaagtagttgatgatgctggtaatcctatacctctccatgaaacctatctccatcattggcttgttcaaagacattatcaaagaaaatat 38227438  T
Q  118 gttacacaca--gaaaatgatagccacatgatgctacaaaactctgatcatgttcttgtgagaaacagtggcatatgccagggaaattatcttggacaat 215  Q
    || |||||||  ||| ||| ||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||  | ||  |||||    
T  38227437 gtcacacacacagaagatgttagccacatgatgcttcaaaactctgatcatgttcttgtaaggaacagtggcatatgccagggaaatgctatttcacaat 38227338  T
Q  216 actttggccttggatccgaaacaagaggaacactgacagatattccggacccttttggtatagaggtaggtaatcctgcagaggttccagaagggtttga 315  Q
    ||||||| ||||| || |||||| |||||||    ||||||||||| || ||||| ||||||||| |||||||||||| |||| ||||| ||||||||||    
T  38227337 actttggacttgggtcagaaacacgaggaacgacaacagatattccagatcctttcggtatagagataggtaatcctgaagagattccacaagggtttga 38227238  T
Q  316 tgagaaatggatggttaatgttcat 340  Q
     || |||||| || |||||||||||    
T  38227237 ggataaatggttgcttaatgttcat 38227213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 18 - 340
Target Start/End: Complemental strand, 38249152 - 38248828
Alignment:
Q  18 tttccatgctgaagtagttgatgaatctggaaatcctatacctctccatgaaacttatctccatcattgggttgttggaagatatcatcaaagaaaacat 117  Q
    |||| |||||||||| |||||||||  ||| ||||||||||| ||||||||||| ||||||||||||||| |||||| | || || ||||||||||| ||    
T  38249152 tttcaatgctgaagttgttgatgaagatggtaatcctatacccctccatgaaacctatctccatcattggcttgttgaatgacattatcaaagaaaatat 38249053  T
Q  118 gttacacaca--gaaaatgatagccacatgatgctacaaaactctgatcatgttcttgtgagaaacagtggcatatgccagggaaattatcttggacaat 215  Q
    || |||||||  ||| ||| ||||||||||||||| ||||||| ||||||||||||||| || ||||||||||||||||||||||||    ||  |||||    
T  38249052 gtcacacacacagaagatggtagccacatgatgcttcaaaactatgatcatgttcttgtaaggaacagtggcatatgccagggaaataccattccacaat 38248953  T
Q  216 actttggccttggatccgaaacaagaggaacactgacagatattccggacccttttggtatagaggtaggtaatcctgcagaggttccagaagggtttga 315  Q
    |||||||||||||||| |||||| |||||||    ||||||||||| || |||||||||||||||  ||||| ||||| |||| ||||||||||||||||    
T  38248952 actttggccttggatcagaaacacgaggaacgacaacagatattccagatccttttggtatagagacaggtagtcctgaagagattccagaagggtttga 38248853  T
Q  316 tgagaaatggatggttaatgttcat 340  Q
     ||||||||| || |||||||||||    
T  38248852 ggagaaatggttgcttaatgttcat 38248828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 38221156 - 38220844
Alignment:
Q  18 tttccatgctgaagtagttgatgaatctggaaatcctatacctctccatgaaacttatctccatcattgggttgttggaagatatcatcaaagaaaacat 117  Q
    |||||||||||||||||||||||||  ||| ||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||    
T  38221156 tttccatgctgaagtagttgatgaagatggtaatcctatacccctccatgaaacttatcttcatcattgggttgttgaaagatatcatcaaagtaaacat 38221057  T
Q  118 gttacacacaga--aaatgatagccacatgatgctacaaaactctgatcatgttcttgtgagaaacagtggcatatgccagggaaattat-cttggacaa 214  Q
    || ||||||| |  ||||||| |||| | |||||   |||| |||||| || || | || || |||||||| |||||||| ||||| |||   |  ||||    
T  38221056 gtcacacacacaagaaatgatggccaaaagatgcctgaaaattctgataatattatggtaaggaacagtggtatatgcca-ggaaagtataaataaacaa 38220958  T
Q  215 tactttggccttggatccgaaacaagaggaacactgacagatattccggacccttttggtatagaggtaggtaatcctgcagaggttccagaagggtttg 314  Q
    |||||||| |||||||| |||||| |||| ||   ||| ||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||| ||    
T  38220957 tactttgggcttggatctgaaacacgagggacggcgactgatattccggatccttttggtatagagataggtaatcctgcagagattccagaagggtatg 38220858  T
Q  315 atgagaaatggatg 328  Q
    | |||| |||||||    
T  38220857 aggagatatggatg 38220844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 151 - 340
Target Start/End: Complemental strand, 38238931 - 38238742
Alignment:
Q  151 acaaaactctgatcatgttcttgtgagaaacagtggcatatgccagggaaattatcttggacaatactttggccttggatccgaaacaagaggaacactg 250  Q
    ||||||||||||| |||| ||| | || |||||||||||||| || ||||||  |||||||||||||||||||||||||||||||||| | |||||   |    
T  38238931 acaaaactctgataatgtgcttataaggaacagtggcatatgtcaaggaaatactcttggacaatactttggccttggatccgaaacacgtggaacggcg 38238832  T
Q  251 acagatattccggacccttttggtatagaggtaggtaatcctgcagaggttccagaagggtttgatgagaaatggatggttaatgttcat 340  Q
    || ||||||||||| ||||| ||||||||| |||| ||||||| |||| |||||||||||||| | || |||||| || |||||||||||    
T  38238831 accgatattccggatcctttcggtatagagataggcaatcctgaagagattccagaagggtttcacgaaaaatggttgcttaatgttcat 38238742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 38239036 - 38238936
Alignment:
Q  18 tttccatgctgaagtagttgatgaatctggaaatcctatacctctccatgaaacttatctccatcattgggttgttggaagatatcatcaaagaaaacat 117  Q
    |||| |||||||||||||||| ||||| || |||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||    
T  38239036 tttcaatgctgaagtagttgacgaatcagggaatcctgtacctctccatgaaacttatctccatcattggcttgttgtaagatatcatcaaagtaaacat 38238937  T
Q  118 g 118  Q
    |    
T  38238936 g 38238936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 23 - 340
Target Start/End: Complemental strand, 17434659 - 17434343
Alignment:
Q  23 atgctgaagtagttgatgaatctggaaatcctatacctctccatgaaacttatctccatcattgggttgttggaagatatcatcaaagaaaacatgttac 122  Q
    |||| ||||| ||||||||| |||| ||| | |||||  | || ||||||||||| |||||||||||||||| ||||||||||| ||||   ||||| ||    
T  17434659 atgcagaagttgttgatgaagctgggaattcgataccgttgcacgaaacttatcttcatcattgggttgttgcaagatatcatctaaga---catgtcac 17434563  T
Q  123 a--cacagaaaatgatagccacatgatgctacaaaactctgatcatgttcttgtgagaaacagtggcatatgccagggaaattatcttggacaatacttt 220  Q
    |  |||||||||||||||||| | |||||| |||||||||||| |||||||||| || |||| |||||||||||||| | ||  ||||  ||| || ||     
T  17434562 atacacagaaaatgatagccataggatgcttcaaaactctgattatgttcttgtaaggaacaatggcatatgccaggcagatattcttccacagtatttc 17434463  T
Q  221 ggccttggatccgaaacaagaggaacactgacagatattccggacccttttggtatagaggtaggtaatcctgcagaggttccagaagggtttgatgaga 320  Q
    |||||||||||||||||| ||||||| | ||| || ||||| || ||||||||||||||| ||||||||||||||||  |||||||||||||||| ||||    
T  17434462 ggccttggatccgaaacacgaggaacgccgactgacattccagatccttttggtatagagataggtaatcctgcagatattccagaagggtttgaggaga 17434363  T
Q  321 aatggatggttaatgttcat 340  Q
    | ||| || ||||| |||||    
T  17434362 agtggttgtttaatattcat 17434343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 23 - 340
Target Start/End: Complemental strand, 17455762 - 17455443
Alignment:
Q  23 atgctgaagtagttgatgaatctggaaatcctatacctctccatgaaacttatctccatcattgggttgttggaagatatcatcaaagaaaacatgttac 122  Q
    |||||||||| ||||||||| |||| ||| | |||||  | || |||||||||||||||||||||||||||||||||||||||||||| || ||||  ||    
T  17455762 atgctgaagttgttgatgaagctgggaattcgataccgttgcacgaaacttatctccatcattgggttgttggaagatatcatcaaagtaatcatgccac 17455663  T
Q  123 acaca--gaaaatgatagccacatgatgctacaaaactctgatcatgttcttgtgagaaacagtggcatatgccagggaaattatcttggacaatacttt 220  Q
    |||||  ||||||||||| |||| |||||| |||||  || |||  | ||| ||||| ||||||||||| ||||| ||||||  ||||  ||| || ||     
T  17455662 acacacagaaaatgatagtcacaagatgcttcaaaaagcttatccaggtctcgtgaggaacagtggcatttgccaaggaaatattcttccacagtatttc 17455563  T
Q  221 ggccttggatccgaaacaagaggaacactgacagatattccggacccttttggtatagaggtaggtaatcctgcagaggttccagaagggtttgatgaga 320  Q
    ||||||||||| |||||| ||||||||| ||| ||||||||||| ||||||||||| ||| | ||||||||  ||||  |||||||||||||||| ||||    
T  17455562 ggccttggatcagaaacacgaggaacaccgaccgatattccggatccttttggtatggagatgggtaatccaacagaaattccagaagggtttgaggaga 17455463  T
Q  321 aatggatggttaatgttcat 340  Q
    ||||| || ||||| |||||    
T  17455462 aatggttgtttaatattcat 17455443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 176
Target Start/End: Original strand, 15913043 - 15913190
Alignment:
Q  31 gtagttgatgaatctggaaatcctatacctctccatgaaacttatctccatcattgggttgttggaagatatcatcaaagaaaacatg--ttacacacag 128  Q
    |||| |||||||  ||| ||||||||||||||||||||||| ||| |||||||||||| ||||| || ||| || ||||| ||||| |    ||||||||    
T  15913043 gtagctgatgaagttggtaatcctatacctctccatgaaacctatttccatcattgggctgttgtaaaataacaacaaagcaaacacgccacacacacag 15913142  T
Q  129 aaaatgatagccacatgatgctacaaaactctgatcatgttcttgtga 176  Q
    |||||||||||||||||||||| |||| || |||||||||||||||||    
T  15913143 aaaatgatagccacatgatgcttcaaagctttgatcatgttcttgtga 15913190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 11485033 - 11485113
Alignment:
Q  24 tgctgaagtagttgatgaatctggaaatcctatacctctccatgaaacttatctccatcattgggttgttggaagatatca 104  Q
    ||||||||||||| ||||||| || ||| |  ||||||||||| |||||||||| ||||||||| |||||| |||||||||    
T  11485033 tgctgaagtagttaatgaatcagggaattcagtacctctccatcaaacttatctacatcattggattgttgtaagatatca 11485113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 11478762 - 11478832
Alignment:
Q  24 tgctgaagtagttgatgaatctggaaatcctatacctctccatgaaacttatctccatcattgggttgttg 94  Q
    ||||||||||||||||||||| ||  || | |||||||||||| |||||||||| || |||||||||||||    
T  11478762 tgctgaagtagttgatgaatcagggcattcaatacctctccatcaaacttatctacaccattgggttgttg 11478832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 340
Target Start/End: Original strand, 11485194 - 11485327
Alignment:
Q  207 ttggacaatactttggccttggatccgaaacaagaggaacactgacagatattccggacccttttggtatagaggtaggtaatcctgcagaggttccaga 306  Q
    |||||||||||| ||| |||||||| ||||||||||| |||   ||| ||||||| ||||||| ||| ||||| || |||||||||| |||  ||||| |    
T  11485194 ttggacaatactatggtcttggatctgaaacaagaggcacaaatacatatattcctgacccttatggcatagaagttggtaatcctgaagaaattccaaa 11485293  T
Q  307 agggtttgatgagaaatggatggttaatgttcat 340  Q
    ||||| ||  || |||||| |  |||||||||||    
T  11485294 agggtatgtggaaaaatggtttattaatgttcat 11485327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 11462185 - 11462255
Alignment:
Q  23 atgctgaagtagttgatgaatctggaaatcctatacctctccatgaaacttatctccatcattgggttgtt 93  Q
    |||||||| |||| |||||||| || ||| || |||||||||| ||||||||||| || |||||| |||||    
T  11462185 atgctgaactagtagatgaatcagggaattctgtacctctccaagaaacttatcttcaccattggattgtt 11462255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 340
Target Start/End: Original strand, 11478923 - 11479056
Alignment:
Q  207 ttggacaatactttggccttggatccgaaacaagaggaacactgacagatattccggacccttttggtatagaggtaggtaatcctgcagaggttccaga 306  Q
    |||||||||||| ||| |||||||| ||||||||||| |||   ||| |||||||  | |||| ||| ||||| || ||||||| || |||  ||||| |    
T  11478923 ttggacaatactatggtcttggatctgaaacaagaggcacaaatacatatattcctcaaccttatggaatagaagttggtaatcatgaagaaattccaaa 11479022  T
Q  307 agggtttgatgagaaatggatggttaatgttcat 340  Q
    ||||| ||  || |||||| || |||||||||||    
T  11479023 agggtatgtggaaaaatggttgattaatgttcat 11479056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 340
Target Start/End: Original strand, 21546630 - 21546761
Alignment:
Q  209 ggacaatactttggccttggatccgaaacaagaggaacactgacagatattccggacccttttggtatagaggtaggtaatcctgcagaggttccagaag 308  Q
    |||||||||| ||| |||||||| ||||||||| | |||   ||| ||||||| ||||||| ||||||||| || ||||||||||| ||  ||||| |||    
T  21546630 ggacaatactatggtcttggatcagaaacaagaagcacaaatacatatattccagacccttatggtatagaagttggtaatcctgctgaaattccaaaag 21546729  T
Q  309 ggtttgatgagaaatggatggttaatgttcat 340  Q
    ||| ||  ||||||||| || | |||||||||    
T  21546730 ggtatgtggagaaatggttgatcaatgttcat 21546761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 291
Target Start/End: Original strand, 47299 - 47381
Alignment:
Q  209 ggacaatactttggccttggatccgaaacaagaggaacactgacagatattccggacccttttggtatagaggtaggtaatcc 291  Q
    ||||| |||| ||| |||||||| ||||||||||| |||   ||| ||||||| ||||||| ||||||||| || ||||||||    
T  47299 ggacagtactatggtcttggatctgaaacaagaggcacaaatacatatattccagacccttatggtatagaagttggtaatcc 47381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 47130 - 47206
Alignment:
Q  18 tttccatgctgaagtagttgatgaatctggaaatcctatacctctccatgaaacttatctccatcattgggttgttg 94  Q
    |||| |||||||| ||||||||||| | |||||| || ||||||| ||| |||||||||| || || |||| |||||    
T  47130 tttcaatgctgaactagttgatgaagcaggaaattctgtacctcttcatcaaacttatctacaccactgggctgttg 47206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University