View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7848_low_7 (Length: 302)
Name: NF7848_low_7
Description: NF7848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7848_low_7 |
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| [»] scaffold0854 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 9 - 284
Target Start/End: Complemental strand, 4229219 - 4228944
Alignment:
| Q |
9 |
tggtgttggtattatgtctaaaattttgtgtctagttatcattcctcctattaaaaataaacattgactaattaaaattttgaatttcgattacgggagt |
108 |
Q |
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| T |
4229219 |
tggtgttggtattgtgtctaaaattttgtatctagttatcattcctcctattaaaaatagacattgactaattaaaattttgaatttcgattacgggagt |
4229120 |
T |
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| Q |
109 |
ttttccatattttttgttcatcacactttcattaaattacatgctgatgaaatctatggaaaatctaaaataaattaatataattttannnnnnnataat |
208 |
Q |
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| T |
4229119 |
ttttccatattttttgttcatcacactttcattaaattacatgccgatgaaatctatggaaaatcaaaaataaattaatataattttatttttttataat |
4229020 |
T |
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| Q |
209 |
tcaaattctcaattttccataaaccttcgttcgaannnnnnnaggaatattaatttatcaatgtgagtagagattc |
284 |
Q |
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| T |
4229019 |
tcaaattctcaattttccataaaccttcgttcgaatttttttaggaatattaatttatcaatgtgagtacagattc |
4228944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 4154731 - 4154778
Alignment:
| Q |
9 |
tggtgttggtattatgtctaaaattttgtgtctagttatcattcctcc |
56 |
Q |
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| T |
4154731 |
tggtgttggtattgtgtctaaaattttgtgtctagttatcattcctcc |
4154778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 41642913 - 41642871
Alignment:
| Q |
12 |
tgttggtattatgtctaaaattttgtgtctagttatcattcct |
54 |
Q |
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| T |
41642913 |
tgttgatattgtgtctaaaattttgtgtctagttatcattcct |
41642871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 14699687 - 14699733
Alignment:
| Q |
9 |
tggtgttggtattatgtctaaaattttgtgtctagttatcattcctc |
55 |
Q |
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| T |
14699687 |
tggtgttggtattgtgtctaaaattttgtgtctagttatcattcctc |
14699733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 53305316 - 53305368
Alignment:
| Q |
12 |
tgttggtattatgtctaaaattttgtgtctagttatcattcctcctattaaaa |
64 |
Q |
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| T |
53305316 |
tgttggtattgtgtttaaaattttgtgtctagttatcattcctcgttttaaaa |
53305368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0854 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0854
Description:
Target: scaffold0854; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 1062 - 1016
Alignment:
| Q |
9 |
tggtgttggtattatgtctaaaattttgtgtctagttatcattcctc |
55 |
Q |
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| T |
1062 |
tggtgttgatattgtgtctaaaattttgtgtctaattatcattcctc |
1016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 8551614 - 8551572
Alignment:
| Q |
9 |
tggtgttggtattatgtctaaaattttgtgtctagttatcatt |
51 |
Q |
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| T |
8551614 |
tggtgttggtattgtgtctaaaattttgtgtctaattatcatt |
8551572 |
T |
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