View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7849_high_1 (Length: 638)
Name: NF7849_high_1
Description: NF7849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7849_high_1 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 591; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 16 - 638
Target Start/End: Original strand, 8457697 - 8458319
Alignment:
| Q |
16 |
agatattcaccaaaatatgtgaaagaatatattgaaggagcaaagccactgttatctgttggggagtattgggatacatgcaactacaacggttctactt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457697 |
agatattcaccaaaatatgtgaaagaatatattgaaggaccaaagccaatgttatctgttggggagtattgggatacatgcaactacaacggttctactt |
8457796 |
T |
|
| Q |
116 |
tggactataaccaaggtatactgcttaaaattctaattcatcaaataaatgaatactttttggttactaagtatatgaatacattggcctttcaatattt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457797 |
tggactataaccaaggtatactgcttaaaattctaattcatcaaataaatgaatactttttggttactaagtatatgaatacattggcctttcaatattt |
8457896 |
T |
|
| Q |
216 |
ctttttcattttacactcagctctcttattttttactctttgcagatagtcatagacaacgaataatcaattggattgatggcactggacagctttcaac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457897 |
ctttttcattttacactcagctctcttattttttactctttgcagataaccatagacaacgaataatcaattggattgatggcactggacagctttcaac |
8457996 |
T |
|
| Q |
316 |
tgcatttgacttcacaacaaagggaattctccaggtacccaacattttgtcctaagtatgttaaatgaaggtttgaaaactaagcattgcagttagatct |
415 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457997 |
tgcatttgacttcacaacgaagggaattctccaggtacccaacattttgtcctaagtatgttaaatgaaggtttgaaaactaagcattgcagttagatct |
8458096 |
T |
|
| Q |
416 |
tacccttttttgctagtcaataagttaatttctttgtacaaactttgatgcgcatgcagtctcatgtatatcaggtattgaattcattttttcatgttac |
515 |
Q |
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| T |
8458097 |
tacccttttttgctagtcaataagttaatttctttgtacaaactttgatacgcatgcagtttcatgtatatcaggtattgaattcattttttcatgttac |
8458196 |
T |
|
| Q |
516 |
cattatttgtaggaagctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtggccttcaagatcagtcg |
615 |
Q |
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| T |
8458197 |
cattatttgtaggaagctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtggccttcaagatcagtca |
8458296 |
T |
|
| Q |
616 |
catttgtagataatcatgatact |
638 |
Q |
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||||||||||||||||||||||| |
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| T |
8458297 |
catttgtagataatcatgatact |
8458319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 381
Target Start/End: Complemental strand, 6827637 - 6827278
Alignment:
| Q |
19 |
tattcaccaaaatatgtgaaagaatatattgaaggagcaaagccactgttatctgttggggagtattgggatacatgcaactacaacggttctactttgg |
118 |
Q |
| |
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||||||||||||||||| ||||| ||||||||||||||| | |||||||||||||| |||||||||| |||| ||||||||||||||||||||||||| |
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| T |
6827637 |
tattcaccaaaatatgttaaagactatattgaaggagcacaaccactgttatctgtcggggagtatttggatgtttgcaactacaacggttctactttgg |
6827538 |
T |
|
| Q |
119 |
actataaccaaggtatactgcttaaaattctaattcatcaaataaatgaatactttttggttactaagtatatgaatacattggcctttcaatatttctt |
218 |
Q |
| |
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|||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||| |
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| T |
6827537 |
actataaccaaggtat---gcttaaaattctcattcatgaaataaatgaatactttttggttactaagtatgtgaatacattaccctttcaatacttctt |
6827441 |
T |
|
| Q |
219 |
tttcattttacactcagctctcttattttttactctttgcagatagtcatagacaacgaataatcaattggattgatggcactggacagctttcaactgc |
318 |
Q |
| |
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|| |||| |||||| ||||| ||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||| |||||| |||||||||| |
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| T |
6827440 |
ttgcattgtacacttagctcacttattttttactttttgcagatagccataggcaacgaataatcaaatggattgatggcagtggacatctttcaactgg |
6827341 |
T |
|
| Q |
319 |
atttgacttcacaacaaagggaattctccaggtacccaacattttgtcctaagtatgttaaat |
381 |
Q |
| |
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||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6827340 |
atttgacttcacaaccaagggaattctccaggtacctaacattttgtcctaagtatgttaaat |
6827278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 483 - 611
Target Start/End: Complemental strand, 6827279 - 6827150
Alignment:
| Q |
483 |
atatcaggtattgaattcattttttcatgttaccattatttgtaggaag-ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacct |
581 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
6827279 |
atatcaggtattgaattcattttctcatgttaccattatttgtaggaattctgtcaagatagaattctggcgtctgcgtgatgctcaagggaagccacct |
6827180 |
T |
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| Q |
582 |
ggtgtgattggatggtggccttcaagatca |
611 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
6827179 |
ggtgtgattggatggtggccttcaagatca |
6827150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 381
Target Start/End: Original strand, 9822507 - 9822866
Alignment:
| Q |
19 |
tattcaccaaaatatgtgaaagaatatattgaaggagcaaagccactgttatctgttggggagtattgggatacatgcaactacaacggttctactttgg |
118 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||| | |||||||||||||| |||||||||| |||| ||||||||||||||||||||||||| |
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| T |
9822507 |
tattcaccaaaatatgttaaagactatattgaaggagcacaaccactgttatctgtcggggagtatttggatgtttgcaactacaacggttctactttgg |
9822606 |
T |
|
| Q |
119 |
actataaccaaggtatactgcttaaaattctaattcatcaaataaatgaatactttttggttactaagtatatgaatacattggcctttcaatatttctt |
218 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||| |
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|
| T |
9822607 |
actataaccaaggtat---gcttaaaattctcattcatgaaataaatgaatactttttggttactaagtatgtgaatacattaccctttcaatacttctt |
9822703 |
T |
|
| Q |
219 |
tttcattttacactcagctctcttattttttactctttgcagatagtcatagacaacgaataatcaattggattgatggcactggacagctttcaactgc |
318 |
Q |
| |
|
|| |||| |||||| ||||| ||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||| |||||| |||||||||| |
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| T |
9822704 |
ttgcattgtacacttagctcacttattttttactttttgcagatagccataggcaacgaataatcaaatggattgatggcagtggacatctttcaactgg |
9822803 |
T |
|
| Q |
319 |
atttgacttcacaacaaagggaattctccaggtacccaacattttgtcctaagtatgttaaat |
381 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9822804 |
atttgacttcacaaccaagggaattctccaggtacctaacattttgtcctaagtatgttaaat |
9822866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 483 - 611
Target Start/End: Original strand, 9822865 - 9822994
Alignment:
| Q |
483 |
atatcaggtattgaattcattttttcatgttaccattatttgtaggaag-ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacct |
581 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
9822865 |
atatcaggtattgaattcattttctcatgttaccattatttgtaggaattctgtcaagatagaattatggcgtctgcgtgatgctcaagggaagccacct |
9822964 |
T |
|
| Q |
582 |
ggtgtgattggatggtggccttcaagatca |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
9822965 |
ggtgtgattggatggtggccttcaagatca |
9822994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 5e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 27964280 - 27964065
Alignment:
| Q |
19 |
tattcaccaaaatatgtgaaagaatatattgaaggagcaaagccactgttatctgttggggagtattgggatacatgcaactacaacggttctactttgg |
118 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||| |
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|
| T |
27964280 |
tattcacctaaatatgttaaagagtatattgaaggagcaaagccactgttatctgtcggggagtatttggatgtttgcaactacaacggttctactttgg |
27964181 |
T |
|
| Q |
119 |
actataaccaaggtatactgcttaaaattctaattcatcaaataaatgaatactttttggttactaagtatatgaatacattggcctttcaatatttctt |
218 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||| |
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|
| T |
27964180 |
actataaccaaggta---tgcttaaaattctcattcat-gaataaatgaatactttttggttactaagtatgtgaatacattaccctttcaatacttctt |
27964085 |
T |
|
| Q |
219 |
tttcattttacactcagctc |
238 |
Q |
| |
|
|| |||| |||||| ||||| |
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| T |
27964084 |
ttgcattgtacacttagctc |
27964065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 532 - 611
Target Start/End: Complemental strand, 27964043 - 27963964
Alignment:
| Q |
532 |
ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtggccttcaagatca |
611 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27964043 |
ctgtcaagatagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattggatggtggccttcaagatca |
27963964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 2e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 488 - 619
Target Start/End: Complemental strand, 25802704 - 25802572
Alignment:
| Q |
488 |
aggtattgaattcattttttcatgttaccattatttgtaggaag-ctgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgt |
586 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25802704 |
aggtattgaattcattttctcatgttaccattatttgtaggaattctgtcaagatagaattttggcgtctgcgtgatgctcaagggaagccacctggtgt |
25802605 |
T |
|
| Q |
587 |
gattggatggtggccttcaagatcagtcgcatt |
619 |
Q |
| |
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|||||||||||||||||||||||||||| |||| |
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| T |
25802604 |
gattggatggtggccttcaagatcagtcacatt |
25802572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 4e-46; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 495 - 612
Target Start/End: Complemental strand, 18361263 - 18361145
Alignment:
| Q |
495 |
gaattcattttttcatgttaccattatttgtaggaagc-tgtcaagagagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattgga |
593 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
18361263 |
gaattcattttctcatgttaccattatttgtaggaatcatgtcaagatagaattttggcgtctgcgtgatgctcaagggaagccacctggtgtgattgaa |
18361164 |
T |
|
| Q |
594 |
tggtggccttcaagatcag |
612 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
18361163 |
tggtggccttcaagatcag |
18361145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 302 - 380
Target Start/End: Complemental strand, 18361345 - 18361265
Alignment:
| Q |
302 |
ggacagctttcaactgcatttgacttcacaacaaagggaat--tctccaggtacccaacattttgtcctaagtatgttaaa |
380 |
Q |
| |
|
||||| ||||||||||||| |||||||||| | |||||||| |||||||||||||| ||||||||| ||||||||||||| |
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|
| T |
18361345 |
ggacaactttcaactgcatatgacttcacagccaagggaatgatctccaggtacccagcattttgtcttaagtatgttaaa |
18361265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 18361425 - 18361362
Alignment:
| Q |
157 |
caaataaatgaatactttttggttactaagtatatgaatacattggcctttcaatatttctttt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||| |||||||||| ||||||| |
|
|
| T |
18361425 |
caaataaatgaatactttttggttactaagcatgtgaatacattaccctttcaatacttctttt |
18361362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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