View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7849_high_3 (Length: 412)

Name: NF7849_high_3
Description: NF7849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7849_high_3
NF7849_high_3
[»] chr3 (18 HSPs)
chr3 (1-394)||(7262532-7262926)
chr3 (61-134)||(12674908-12674981)
chr3 (55-140)||(52925722-52925807)
chr3 (66-138)||(40339076-40339148)
chr3 (56-142)||(35264523-35264609)
chr3 (54-137)||(3845222-3845305)
chr3 (58-137)||(38022329-38022408)
chr3 (55-93)||(44958717-44958755)
chr3 (57-138)||(3776430-3776511)
chr3 (77-137)||(52363957-52364017)
chr3 (53-136)||(25359682-25359765)
chr3 (61-108)||(54596739-54596786)
chr3 (12-54)||(31708223-31708265)
chr3 (8-42)||(43661910-43661944)
chr3 (64-140)||(25129641-25129718)
chr3 (59-136)||(48410927-48411004)
chr3 (61-134)||(52141362-52141435)
chr3 (59-135)||(1290675-1290751)
[»] chr1 (14 HSPs)
chr1 (54-137)||(15478111-15478194)
chr1 (59-140)||(45660864-45660944)
chr1 (62-135)||(35681824-35681897)
chr1 (57-103)||(24587835-24587881)
chr1 (3-52)||(48548989-48549038)
chr1 (65-136)||(36529398-36529469)
chr1 (65-138)||(6041370-6041441)
chr1 (62-104)||(30557441-30557483)
chr1 (12-54)||(30557561-30557603)
chr1 (61-134)||(36780234-36780307)
chr1 (10-42)||(3016233-3016265)
chr1 (22-54)||(30850393-30850425)
chr1 (3-51)||(34915128-34915176)
chr1 (59-111)||(47892503-47892555)
[»] chr7 (10 HSPs)
chr7 (56-138)||(45004876-45004958)
chr7 (55-138)||(15050184-15050266)
chr7 (54-95)||(12306668-12306709)
chr7 (57-104)||(12306902-12306949)
chr7 (62-132)||(38123766-38123836)
chr7 (8-42)||(40561738-40561772)
chr7 (54-107)||(6996457-6996510)
chr7 (59-116)||(17111788-17111845)
chr7 (5-54)||(24109518-24109567)
chr7 (156-184)||(43653222-43653250)
[»] chr4 (17 HSPs)
chr4 (61-138)||(49138952-49139029)
chr4 (59-138)||(2635054-2635133)
chr4 (59-107)||(16551879-16551927)
chr4 (67-137)||(33843583-33843653)
chr4 (54-138)||(48045811-48045896)
chr4 (61-140)||(2326928-2327007)
chr4 (61-140)||(21691337-21691416)
chr4 (64-134)||(41058821-41058891)
chr4 (237-282)||(10160915-10160960)
chr4 (18-54)||(16552014-16552050)
chr4 (8-55)||(47144272-47144319)
chr4 (12-54)||(32818354-32818396)
chr4 (56-134)||(45329741-45329819)
chr4 (54-108)||(46344941-46344995)
chr4 (8-54)||(55927750-55927796)
chr4 (59-107)||(35064985-35065033)
chr4 (149-209)||(54458006-54458066)
[»] scaffold0168 (1 HSPs)
scaffold0168 (61-137)||(31718-31794)
[»] chr6 (16 HSPs)
chr6 (59-137)||(5724745-5724823)
chr6 (56-139)||(33136595-33136677)
chr6 (57-138)||(1485259-1485341)
chr6 (54-131)||(33141817-33141893)
chr6 (61-141)||(578818-578898)
chr6 (70-134)||(7262966-7263030)
chr6 (68-136)||(34910896-34910964)
chr6 (61-140)||(4910797-4910876)
chr6 (15-54)||(17225911-17225950)
chr6 (8-54)||(4910967-4911013)
chr6 (62-108)||(34620807-34620853)
chr6 (62-108)||(34748244-34748290)
chr6 (9-54)||(12766640-12766685)
chr6 (59-108)||(25195479-25195528)
chr6 (61-106)||(26550442-26550487)
chr6 (62-138)||(10400814-10400890)
[»] chr5 (10 HSPs)
chr5 (61-134)||(39097159-39097232)
chr5 (61-139)||(22226353-22226431)
chr5 (60-138)||(35108130-35108208)
chr5 (59-107)||(3043119-3043167)
chr5 (61-117)||(35957858-35957914)
chr5 (62-136)||(15368136-15368210)
chr5 (9-42)||(12208814-12208847)
chr5 (54-107)||(18637224-18637277)
chr5 (65-137)||(5468666-5468737)
chr5 (56-140)||(29922783-29922867)
[»] chr2 (17 HSPs)
chr2 (59-140)||(33047667-33047748)
chr2 (62-140)||(7629751-7629829)
chr2 (61-136)||(3716752-3716827)
chr2 (3-54)||(16518837-16518888)
chr2 (62-109)||(40582669-40582716)
chr2 (8-54)||(8800678-8800724)
chr2 (12-50)||(11504046-11504084)
chr2 (12-54)||(33019140-33019182)
chr2 (9-54)||(1976845-1976890)
chr2 (8-53)||(15220841-15220886)
chr2 (64-105)||(37420317-37420358)
chr2 (56-109)||(42774947-42775000)
chr2 (61-105)||(15928551-15928595)
chr2 (247-283)||(37539167-37539203)
chr2 (65-137)||(37561599-37561671)
chr2 (54-86)||(43501086-43501118)
chr2 (64-136)||(43717235-43717307)
[»] chr8 (12 HSPs)
chr8 (237-300)||(35483324-35483387)
chr8 (61-104)||(13384771-13384814)
chr8 (12-54)||(32927951-32927993)
chr8 (57-139)||(39648258-39648340)
chr8 (53-136)||(15677907-15677990)
chr8 (59-117)||(3120518-3120576)
chr8 (57-134)||(8700754-8700830)
chr8 (9-42)||(13929678-13929711)
chr8 (237-298)||(40181370-40181431)
chr8 (64-112)||(8252714-8252762)
chr8 (18-54)||(32101132-32101168)
chr8 (18-54)||(38335851-38335887)
[»] scaffold0971 (1 HSPs)
scaffold0971 (66-136)||(1807-1877)
[»] scaffold0899 (1 HSPs)
scaffold0899 (66-136)||(523-593)


Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 7262926 - 7262532
Alignment:
Q  1 ataatgttttatgttttgatacattcatgtaaaagtgagttggactataaattttgagagcaaccaaacatgtcagaatcaattcttcacctctaaaatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7262926 ataatgttttatgttttgatacattcatgtaaaagtgagttggacgataaattttgagagcaaccaaacatgtcagaatcaattcttcacctctaaaatc 7262827  T
Q  101 aattttggcccatctaatagtgaaaccaaacatacactaattcaattcacatagttaa-tgaagtgttagatttggttaatagatgtatctggtgttata 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7262826 aattttggcccatctaatagtgaaaccaaacatacactaattcaattcacatagttaaatgaagtgttagatttggttaatagatgtatctggtgttata 7262727  T
Q  200 acttattaactatacaatataatggacatcactaaccattaaccttgatttttaagtgttcaaatctacatgtatttggaacacctgaaatcgtggttaa 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7262726 acttattaactatacaatataatggacatcactaaccattaaccttgatttttaagtgttcaaatctacatgtatttggaacacctgaaatcgtggttaa 7262627  T
Q  300 tgatgcttaaattgtgtctaattaagttcatttgatgattgatgagttggtgagtcttgatatatttattaactactcattgaaatgagttaact 394  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7262626 tgatgcttaaattatgtctaattaagttcatttgatgattgatgagttggcgagtcttgatatatttattaactactcattgaaatgagttaact 7262532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 12674981 - 12674908
Alignment:
Q  61 caaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacata 134  Q
    ||||||||||||| || ||||||||| |||||| | ||||||||||||||||||||| | | ||||||||||||    
T  12674981 caaccaaacatgttaggatcaattctacacctccagaatcaattttggcccatctaagactaaaaccaaacata 12674908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 140
Target Start/End: Original strand, 52925722 - 52925807
Alignment:
Q  55 tgagagcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatacactaa 140  Q
    ||||||||||||||||||||| |||||||| | |||||||| ||||||||||| | | || || |||| |||| ||||||||||||    
T  52925722 tgagagcaaccaaacatgtcaaaatcaattatacacctctagaatcaattttgactcctccaaaagtggaaccgaacatacactaa 52925807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 66 - 138
Target Start/End: Complemental strand, 40339148 - 40339076
Alignment:
Q  66 aaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatacact 138  Q
    |||||||||| |||||||| | | |||||||||||||||||||||| || || ||| ||||||||||||||||    
T  40339148 aaacatgtcaaaatcaattatactcctctaaaatcaattttggcccttccaaaagttaaaccaaacatacact 40339076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 56 - 142
Target Start/End: Original strand, 35264523 - 35264609
Alignment:
Q  56 gagagcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatacactaatt 142  Q
    |||||||||||||||||| |||||||||| | | |||||| ||| ||||||| ||  ||||  | ||||||||||||||||||||||    
T  35264523 gagagcaaccaaacatgtgagaatcaattttactcctctagaataaattttgaccactctagaaatgaaaccaaacatacactaatt 35264609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 137
Target Start/End: Original strand, 3845222 - 3845305
Alignment:
Q  54 ttgagagcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatacac 137  Q
    |||||| ||| ||||||||||| |||||||||| |||||||| ||||||||||||    || || |||| ||||||||||||||    
T  3845222 ttgagatcaaacaaacatgtcaaaatcaattctacacctctagaatcaattttggttactccaaaagtggaaccaaacatacac 3845305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 38022408 - 38022329
Alignment:
Q  58 gagcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatacac 137  Q
    |||||| |||||||| || |||||||||| ||| |||| |||||| ||||| || ||||  |||||||||||||||||||    
T  38022408 gagcaatcaaacatgccaaaatcaattctacacttctagaatcaactttggtccttctagaagtgaaaccaaacatacac 38022329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 44958717 - 44958755
Alignment:
Q  55 tgagagcaaccaaacatgtcagaatcaattcttcacctc 93  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  44958717 tgagagcaaccaaacatgtcagaatcaattctacacctc 44958755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 138
Target Start/End: Complemental strand, 3776511 - 3776430
Alignment:
Q  57 agagcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatacact 138  Q
    |||| |||||||||||||| |||||||||| |||||||| || |||||||| | | || || |||| ||||||| |||||||    
T  3776511 agaggaaccaaacatgtcaaaatcaattctacacctctataaccaattttgtctcctccaaaagtggaaccaaatatacact 3776430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 52364017 - 52363957
Alignment:
Q  77 aatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatacac 137  Q
    |||||||| | |||||||| |||||||||||| || ||||| |||| ||||||||||||||    
T  52364017 aatcaattatacacctctataatcaattttggtccctctaaaagtggaaccaaacatacac 52363957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 136
Target Start/End: Original strand, 25359682 - 25359765
Alignment:
Q  53 tttgagagcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacataca 136  Q
    ||||| ||||||||||||||  |||| |||||||  ||||| | |||||||| |||||  ||||| |||| |||||||||||||    
T  25359682 tttgacagcaaccaaacatggtagaagcaattctatacctccataatcaattctggccactctaaaagtggaaccaaacataca 25359765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 54596786 - 54596739
Alignment:
Q  61 caaccaaacatgtcagaatcaattcttcacctctaaaatcaattttgg 108  Q
    ||||||||||||||| |||||||| | |||||||||||| ||||||||    
T  54596786 caaccaaacatgtcataatcaattttacacctctaaaattaattttgg 54596739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 31708223 - 31708265
Alignment:
Q  12 tgttttgatacattcatgtaaaagtgagttggactataaattt 54  Q
    ||||| ||||||||||||||||||||||||| | |||||||||    
T  31708223 tgtttggatacattcatgtaaaagtgagttgaattataaattt 31708265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 43661944 - 43661910
Alignment:
Q  8 tttatgttttgatacattcatgtaaaagtgagttg 42  Q
    |||||||||| ||||||||||||||||||||||||    
T  43661944 tttatgtttttatacattcatgtaaaagtgagttg 43661910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 25129641 - 25129718
Alignment:
Q  64 ccaaacatgtcagaatcaattcttca-cctctaaaatcaattttggcccatctaatagtgaaaccaaacatacactaa 140  Q
    |||||||||  | |||||||||| || |||||| ||||||||||| ||| || || | ||||||||||||||||||||    
T  25129641 ccaaacatgataaaatcaattctacaacctctagaatcaattttgacccctcgaaaattgaaaccaaacatacactaa 25129718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 48410927 - 48411004
Alignment:
Q  59 agcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacataca 136  Q
    ||||| ||||||| |||||||||||||  ||| | || |||||||| || ||| ||||| |||| |||||||||||||    
T  48410927 agcaatcaaacatctcagaatcaattccacacttatagaatcaattctgacccctctaaaagtgtaaccaaacataca 48411004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 52141362 - 52141435
Alignment:
Q  61 caaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacata 134  Q
    |||| |||||| |||||||| ||||| |||||| |||||||||| ||| || ||||  |||| |||||||||||    
T  52141362 caactaaacatatcagaatctattctacacctcaaaaatcaattatggtccctctagaagtggaaccaaacata 52141435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 1290751 - 1290675
Alignment:
Q  59 agcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatac 135  Q
    ||||||||||||  ||| |||||||||| |||||||| |||||||||| |  | ||||  |||| ||||||||||||    
T  1290751 agcaaccaaacaaatcaaaatcaattctacacctctagaatcaattttagttcctctagaagtggaaccaaacatac 1290675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 54 - 137
Target Start/End: Original strand, 15478111 - 15478194
Alignment:
Q  54 ttgagagcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatacac 137  Q
    |||||||||||||||||||||| |||||||||| |||| |||||||||| |||||| | || || |||| ||||||||||||||    
T  15478111 ttgagagcaaccaaacatgtcaaaatcaattctacaccgctaaaatcaagtttggctcctccaaaagtggaaccaaacatacac 15478194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 59 - 140
Target Start/End: Original strand, 45660864 - 45660944
Alignment:
Q  59 agcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatacactaa 140  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||| || |  |||| ||| |||||||||||||    
T  45660864 agcaaccaaacatgtcagaatcaattcttcacctc-caaatcaattttggcccctccagaagtggaacgaaacatacactaa 45660944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 35681897 - 35681824
Alignment:
Q  62 aaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatac 135  Q
    ||||||||||||||||||||||  | ||| ||||||||||| |||| ||| ||||| |||||||||||||||||    
T  35681897 aaccaaacatgtcagaatcaatgttacacatctaaaatcaactttgacccctctaaaagtgaaaccaaacatac 35681824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 24587881 - 24587835
Alignment:
Q  57 agagcaaccaaacatgtcagaatcaattcttcacctctaaaatcaat 103  Q
    ||||||||||||||||||| |||||||||| |||||||| |||||||    
T  24587881 agagcaaccaaacatgtcacaatcaattctacacctctagaatcaat 24587835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 48548989 - 48549038
Alignment:
Q  3 aatgttttatgttttgatacattcatgtaaaagtgagttggactataaat 52  Q
    |||| |||||||||||||||||| |||||||||||||||| || ||||||    
T  48548989 aatgatttatgttttgatacatttatgtaaaagtgagttgaacaataaat 48549038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 65 - 136
Target Start/End: Complemental strand, 36529469 - 36529398
Alignment:
Q  65 caaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacataca 136  Q
    ||||||||||| ||| |||||| ||  |||||||| ||||||||| | ||||| ||||||| ||||||||||    
T  36529469 caaacatgtcaaaattaattctacatttctaaaattaattttggcacctctaaaagtgaaatcaaacataca 36529398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 6041441 - 6041370
Alignment:
Q  65 caaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatacact 138  Q
    |||||||||||  || |||||||| ||||||||||||| | |||| |||| || |||| |||||||||||||||    
T  6041441 caaacatgtca--atgaattcttcgcctctaaaatcaaatgtggctcatccaaaagtggaaccaaacatacact 6041370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 30557483 - 30557441
Alignment:
Q  62 aaccaaacatgtcagaatcaattcttcacctctaaaatcaatt 104  Q
    ||||||||||||||||||||||||| |||||| | ||||||||    
T  30557483 aaccaaacatgtcagaatcaattctacacctccagaatcaatt 30557441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 30557603 - 30557561
Alignment:
Q  12 tgttttgatacattcatgtaaaagtgagttggactataaattt 54  Q
    ||||| ||||||||||| ||||||||||||| |||||||||||    
T  30557603 tgtttggatacattcatataaaagtgagttgaactataaattt 30557561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 36780234 - 36780307
Alignment:
Q  61 caaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacata 134  Q
    ||||||||||| ||| |||||||||| |||||| | |||||||| ||| || ||||| ||| ||| ||||||||    
T  36780234 caaccaaacatatcaaaatcaattctacacctccataatcaattatggtccctctaaaagtaaaatcaaacata 36780307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 3016265 - 3016233
Alignment:
Q  10 tatgttttgatacattcatgtaaaagtgagttg 42  Q
    ||||||| |||||||||||||||||||||||||    
T  3016265 tatgtttggatacattcatgtaaaagtgagttg 3016233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 30850393 - 30850425
Alignment:
Q  22 cattcatgtaaaagtgagttggactataaattt 54  Q
    ||||||||||||||||||||| |||||||||||    
T  30850393 cattcatgtaaaagtgagttgaactataaattt 30850425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 34915176 - 34915128
Alignment:
Q  3 aatgttttatgttttgatacattcatgtaaaagtgagttggactataaa 51  Q
    |||| |||||||||  |||||||||||||||||||||||| | ||||||    
T  34915176 aatgatttatgtttgaatacattcatgtaaaagtgagttgaattataaa 34915128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 47892503 - 47892555
Alignment:
Q  59 agcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggccc 111  Q
    |||||||||||||| | ||||||||||| ||| || | |||||||||||||||    
T  47892503 agcaaccaaacatgacggaatcaattctacacttccataatcaattttggccc 47892555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 138
Target Start/End: Complemental strand, 45004958 - 45004876
Alignment:
Q  56 gagagcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatacact 138  Q
    ||||| |||||||||||||| |||||||||| |||||||| ||||||||||||||| | ||  |||||||||||| |||||||    
T  45004958 gagagtaaccaaacatgtcaaaatcaattctacacctctagaatcaattttggcccttttagaagtgaaaccaaatatacact 45004876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 138
Target Start/End: Complemental strand, 15050266 - 15050184
Alignment:
Q  55 tgagagcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatacact 138  Q
    |||||| ||||||||| |||| |||||||||||||| |||| ||||||||||||| | || || |||| |||||||||||||||    
T  15050266 tgagagtaaccaaacaggtcaaaatcaattcttcacttctagaatcaattttggctcctccaa-agtggaaccaaacatacact 15050184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 12306709 - 12306668
Alignment:
Q  54 ttgagagcaaccaaacatgtcagaatcaattcttcacctcta 95  Q
    |||||||||||||||||||||| |||||||||| ||||||||    
T  12306709 ttgagagcaaccaaacatgtcaaaatcaattctacacctcta 12306668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 12306949 - 12306902
Alignment:
Q  57 agagcaaccaaacatgtcagaatcaattcttcacctctaaaatcaatt 104  Q
    ||||||||||||||||||| |||||||| | |||||| ||||||||||    
T  12306949 agagcaaccaaacatgtcaaaatcaattttgcacctccaaaatcaatt 12306902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 38123766 - 38123836
Alignment:
Q  62 aaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaaca 132  Q
    |||||||||||| | |||||||||| || ||||| ||||||||||||| | || || |||| |||||||||    
T  38123766 aaccaaacatgttaaaatcaattctacatctctagaatcaattttggctcctccaaaagtggaaccaaaca 38123836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 40561738 - 40561772
Alignment:
Q  8 tttatgttttgatacattcatgtaaaagtgagttg 42  Q
    ||||||||| |||||||||||||||||||||||||    
T  40561738 tttatgtttggatacattcatgtaaaagtgagttg 40561772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 6996510 - 6996457
Alignment:
Q  54 ttgagagcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttg 107  Q
    ||||||| ||||||||||||||||||||||| | || | ||| |||||||||||    
T  6996510 ttgagagtaaccaaacatgtcagaatcaattttacatccctagaatcaattttg 6996457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 17111845 - 17111788
Alignment:
Q  59 agcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatcta 116  Q
    |||||||||||||||||||||||||||  || ||||| ||| ||||||| ||| ||||    
T  17111845 agcaaccaaacatgtcagaatcaattcgacatctctagaattaattttgacccctcta 17111788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 24109567 - 24109518
Alignment:
Q  5 tgttttatgttttgatacattcatgtaaaagtgagttggactataaattt 54  Q
    |||||| ||||||||||  |||||||||||||||| ||||||||| ||||    
T  24109567 tgttttgtgttttgatatgttcatgtaaaagtgagctggactatagattt 24109518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 184
Target Start/End: Original strand, 43653222 - 43653250
Alignment:
Q  156 taatgaagtgttagatttggttaatagat 184  Q
    |||||||||||||||||||||||||||||    
T  43653222 taatgaagtgttagatttggttaatagat 43653250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 49138952 - 49139029
Alignment:
Q  61 caaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatacact 138  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||  | ||  |||| |||||||||||||||    
T  49138952 caaccaaacatgtcagaatcaattctacacctctagaatcaattttggccactttagaagtggaaccaaacatacact 49139029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 59 - 138
Target Start/End: Complemental strand, 2635133 - 2635054
Alignment:
Q  59 agcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatacact 138  Q
    ||||| ||||||||||| |||||||| | ||| |||| |||||||||||| || ||||| ||||||||||||||||||||    
T  2635133 agcaatcaaacatgtcaaaatcaattttacacttctagaatcaattttggtccctctaaaagtgaaaccaaacatacact 2635054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 16551927 - 16551879
Alignment:
Q  59 agcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttg 107  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  16551927 agcaaccatacatgtcagaatcaattctacacctctaaaatcaattttg 16551879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 137
Target Start/End: Complemental strand, 33843653 - 33843583
Alignment:
Q  67 aacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatacac 137  Q
    ||||| ||||||| |||||| |||||||| |||||||||||| || ||||  |||||||||||||||||||    
T  33843653 aacatttcagaattaattctacacctctagaatcaattttggaccctctagaagtgaaaccaaacatacac 33843583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 48045811 - 48045896
Alignment:
Q  54 ttgagagcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttgg-cccatctaatagtgaaaccaaacatacact 138  Q
    |||| |||||||||||||||| ||||||||||| |  ||||| |||||||||||| ||| ||||  |||| |||||||||||||||    
T  48045811 ttgaaagcaaccaaacatgtccgaatcaattctacttctctagaatcaattttggccccctctagaagtggaaccaaacatacact 48045896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 140
Target Start/End: Original strand, 2326928 - 2327007
Alignment:
Q  61 caaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatacactaa 140  Q
    ||||||||||||||| ||||||||||  ||||| | ||| |||| ||| ||  |||| ||||||||||||||||||||||    
T  2326928 caaccaaacatgtcataatcaattctatacctccataattaattatggtcccactaaaagtgaaaccaaacatacactaa 2327007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 140
Target Start/End: Original strand, 21691337 - 21691416
Alignment:
Q  61 caaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatacactaa 140  Q
    |||||||| ||||||||||||||||| |||||| | |||||||| ||| || ||||  |||| |||||||||| ||||||    
T  21691337 caaccaaatatgtcagaatcaattctacacctccagaatcaattctggtccctctagaagtggaaccaaacatgcactaa 21691416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 41058891 - 41058821
Alignment:
Q  64 ccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacata 134  Q
    |||||||||||| |||||||||| | ||| || ||||||||| ||| ||||||| |||| |||||||||||    
T  41058891 ccaaacatgtcacaatcaattctactcctttagaatcaatttaggctcatctaaaagtggaaccaaacata 41058821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 10160915 - 10160960
Alignment:
Q  237 attaaccttgatttttaagtgttcaaatctacatgtatttggaaca 282  Q
    |||||| |||||||| ||||||||||||||||||||| ||||||||    
T  10160915 attaactttgattttcaagtgttcaaatctacatgtagttggaaca 10160960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 16552050 - 16552014
Alignment:
Q  18 gatacattcatgtaaaagtgagttggactataaattt 54  Q
    ||||||||||||||||||||||||| |||||||||||    
T  16552050 gatacattcatgtaaaagtgagttgaactataaattt 16552014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 47144319 - 47144272
Alignment:
Q  8 tttatgttttgatacattcatgtaaaagtgagttggactataaatttt 55  Q
    ||||||||| ||||||||||| ||||||| |||||||| |||||||||    
T  47144319 tttatgtttggatacattcatctaaaagttagttggacaataaatttt 47144272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 32818354 - 32818396
Alignment:
Q  12 tgttttgatacattcatgtaaaagtgagttggactataaattt 54  Q
    ||||| ||||||||||||||||||| ||||| |||||||||||    
T  32818354 tgtttggatacattcatgtaaaagttagttgaactataaattt 32818396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 45329819 - 45329741
Alignment:
Q  56 gagagcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacata 134  Q
    |||||||||||||||||| | | |||||| | |||||||| ||||||||||||| | |  || |||| |||||||||||    
T  45329819 gagagcaaccaaacatgttaaagtcaattttacacctctataatcaattttggctcttacaaaagtggaaccaaacata 45329741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 46344941 - 46344995
Alignment:
Q  54 ttgagagcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttgg 108  Q
    |||| ||||||||||||||||||||| |||| | |||||| | ||||||||||||    
T  46344941 ttgaaagcaaccaaacatgtcagaattaattatacacctccataatcaattttgg 46344995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 55927750 - 55927796
Alignment:
Q  8 tttatgttttgatacattcatgtaaaagtgagttggactataaattt 54  Q
    ||||||||| ||||||||||||||||||||| ||| || ||||||||    
T  55927750 tttatgtttggatacattcatgtaaaagtgacttgaacaataaattt 55927796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 35065033 - 35064985
Alignment:
Q  59 agcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttg 107  Q
    |||||||||| |||||| |||||||||| |||||| | |||||||||||    
T  35065033 agcaaccaaaaatgtcataatcaattctacacctccataatcaattttg 35064985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 209
Target Start/End: Complemental strand, 54458066 - 54458006
Alignment:
Q  149 acatagttaatgaagtgttagatttggttaatagatgtatctggtgttataacttattaac 209  Q
    |||| |||||||||||||||||||| |||||||||| ||||  || ||  |||||||||||    
T  54458066 acatggttaatgaagtgttagatttagttaatagatatatcaagtattgcaacttattaac 54458006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 61 - 137
Target Start/End: Complemental strand, 31794 - 31718
Alignment:
Q  61 caaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatacac 137  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||| |  ||||  |||| ||||||||||||||    
T  31794 caaccaaacatgtcagaatcaattctacacctctagaatcaattttggtcactctagaagtggaaccaaacatacac 31718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 59 - 137
Target Start/End: Original strand, 5724745 - 5724823
Alignment:
Q  59 agcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatacac 137  Q
    |||| ||||||||||||||||||||||| ||| |||| ||| ||||||||||| ||||  |||| ||||||||||||||    
T  5724745 agcatccaaacatgtcagaatcaattctacacttctagaattaattttggcccctctagaagtggaaccaaacatacac 5724823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 33136595 - 33136677
Alignment:
Q  56 gagagcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatacacta 139  Q
    |||||||||||||||||||| |||||||| | |||||||| ||| |||||||| |  || || |||||||||||| ||||||||    
T  33136595 gagagcaaccaaacatgtcaaaatcaattatacacctctagaattaattttgg-ctttccaaaagtgaaaccaaatatacacta 33136677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 138
Target Start/End: Original strand, 1485259 - 1485341
Alignment:
Q  57 agagcaaccaaacatgtca-gaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatacact 138  Q
    ||||||| ||||||||||| ||||||||||| |||||||| |||| || ||| ||| ||||  |||||||||||| |||||||    
T  1485259 agagcaaacaaacatgtcaagaatcaattctacacctctagaatccatattgacccctctagaagtgaaaccaaatatacact 1485341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 33141817 - 33141893
Alignment:
Q  54 ttgagagcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaac 131  Q
    |||||||||||||||||| ||| |||||||| | |||  ||| ||||||||||||| | ||||| |||||||||||||    
T  33141817 ttgagagcaaccaaacatatcaaaatcaattttacactgctagaatcaattttggctc-tctaaaagtgaaaccaaac 33141893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 141
Target Start/End: Complemental strand, 578898 - 578818
Alignment:
Q  61 caaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatacactaat 141  Q
    |||| |||||||||| |||||||| | | |||||||||||||| ||| ||| || ||   |||||||||||||||||||||    
T  578898 caactaaacatgtcaaaatcaattttactcctctaaaatcaatcttgtcccttccaaacttgaaaccaaacatacactaat 578818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 7263030 - 7262966
Alignment:
Q  70 atgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacata 134  Q
    |||||| |||||||||| ||| |||| ||||||||||| | ||||||| |||| |||||||||||    
T  7263030 atgtcaaaatcaattctacacttctagaatcaattttgcctcatctaaaagtggaaccaaacata 7262966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 34910964 - 34910896
Alignment:
Q  68 acatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacataca 136  Q
    |||||| || ||||||||| |||||||| |||| |||||||||| ||||  |||||||||||| |||||    
T  34910964 acatgttaggatcaattctacacctctagaatcgattttggcccctctagaagtgaaaccaaaaataca 34910896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 140
Target Start/End: Complemental strand, 4910876 - 4910797
Alignment:
Q  61 caaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatacactaa 140  Q
    |||||||||||||||||||||||||| ||| |  | |||||||| | | |  ||||| |||| |||||||||||||||||    
T  4910876 caaccaaacatgtcagaatcaattctacacattcagaatcaattatagtctctctaaaagtggaaccaaacatacactaa 4910797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 17225950 - 17225911
Alignment:
Q  15 tttgatacattcatgtaaaagtgagttggactataaattt 54  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  17225950 tttgatacattcatgtaaaactgagttgaactataaattt 17225911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 4911013 - 4910967
Alignment:
Q  8 tttatgttttgatacattcatgtaaaagtgagttggactataaattt 54  Q
    ||||||||| |||||||| |||||||||||||| | |||||||||||    
T  4911013 tttatgtttggatacatttatgtaaaagtgagtcgaactataaattt 4910967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 34620853 - 34620807
Alignment:
Q  62 aaccaaacatgtcagaatcaattcttcacctctaaaatcaattttgg 108  Q
    |||||||||||||| |||||||||| ||||| || ||||||||||||    
T  34620853 aaccaaacatgtcaaaatcaattctacacctttagaatcaattttgg 34620807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 34748290 - 34748244
Alignment:
Q  62 aaccaaacatgtcagaatcaattcttcacctctaaaatcaattttgg 108  Q
    |||||||||||||| |||||||||| ||||| || ||||||||||||    
T  34748290 aaccaaacatgtcaaaatcaattctacacctttagaatcaattttgg 34748244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 12766640 - 12766685
Alignment:
Q  9 ttatgttttgatacattcatgtaaaagtgagttggactataaattt 54  Q
    ||||||||||||||||||||| |||||||||||  || ||||||||    
T  12766640 ttatgttttgatacattcatgcaaaagtgagttaaacaataaattt 12766685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 25195479 - 25195528
Alignment:
Q  59 agcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttgg 108  Q
    |||||||||||||||||||||||||| | ||| || | ||||||||||||    
T  25195479 agcaaccaaacatgtcagaatcaattatacacatccagaatcaattttgg 25195528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 26550487 - 26550442
Alignment:
Q  61 caaccaaacatgtcagaatcaattcttcacctctaaaatcaatttt 106  Q
    ||||||||||||||| |||||||||| |||||||| ||||| ||||    
T  26550487 caaccaaacatgtcaaaatcaattctacacctctataatcattttt 26550442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 10400814 - 10400890
Alignment:
Q  62 aaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatacact 138  Q
    |||||||||| ||| |||||||| | |||||||| |||||||||||   | || || |||| |||||||||||||||    
T  10400814 aaccaaacatatcaaaatcaattatacacctctagaatcaattttgcatcctccaagagtggaaccaaacatacact 10400890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 39097232 - 39097159
Alignment:
Q  61 caaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacata 134  Q
    ||||||||||||||| |||||||||| |||||||| ||||||||| || |  ||||| ||||||||||||||||    
T  39097232 caaccaaacatgtcaaaatcaattctacacctctataatcaatttcggtctctctaaaagtgaaaccaaacata 39097159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 22226353 - 22226431
Alignment:
Q  61 caaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatacacta 139  Q
    |||||||||||||||||||||||||| ||| || |||||||||| | |  | ||||| |||| || |||||||||||||    
T  22226353 caaccaaacatgtcagaatcaattctacacgtccaaaatcaattatagttcgtctaaaagtggaatcaaacatacacta 22226431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 35108208 - 35108130
Alignment:
Q  60 gcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatacact 138  Q
    |||| |||| ||||||||||||||| | ||| || ||||||||||||| ||  ||||| |||||||||||| |||||||    
T  35108208 gcaatcaaatatgtcagaatcaattatacacttccaaaatcaattttgacctctctaaaagtgaaaccaaagatacact 35108130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 3043119 - 3043167
Alignment:
Q  59 agcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttg 107  Q
    |||||| |||||||||| |||||||||| |||||||| |||||||||||    
T  3043119 agcaactaaacatgtcaaaatcaattctacacctctagaatcaattttg 3043167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 35957858 - 35957914
Alignment:
Q  61 caaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaa 117  Q
    |||||||||||||||||||||||| | |||| ||||||| |||| | ||||||||||    
T  35957858 caaccaaacatgtcagaatcaattttacaccactaaaattaattatagcccatctaa 35957914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 136
Target Start/End: Complemental strand, 15368210 - 15368136
Alignment:
Q  62 aaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacataca 136  Q
    ||||| |||||||| |||||||||| ||  |||| ||||||||||||| | || || |||| |||||||||||||    
T  15368210 aaccatacatgtcaaaatcaattctacatatctagaatcaattttggctcctccaaaagtggaaccaaacataca 15368136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 12208814 - 12208847
Alignment:
Q  9 ttatgttttgatacattcatgtaaaagtgagttg 42  Q
    ||||||||||||||||||||||||||||| ||||    
T  12208814 ttatgttttgatacattcatgtaaaagtgggttg 12208847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 18637277 - 18637224
Alignment:
Q  54 ttgagagcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttg 107  Q
    |||| |||||||||||||||  ||||||||| ||||||| || |||||||||||    
T  18637277 ttgaaagcaaccaaacatgtaggaatcaattgttcacctttagaatcaattttg 18637224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 5468737 - 5468666
Alignment:
Q  65 caaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatacac 137  Q
    ||||||||||| ||||||| || |||||||| |||||||| || ||| | ||| |||| ||||||||||||||    
T  5468737 caaacatgtcataatcaat-ctacacctctagaatcaattatgacccctttaaaagtggaaccaaacatacac 5468666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 140
Target Start/End: Complemental strand, 29922867 - 29922783
Alignment:
Q  56 gagagcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatacactaa 140  Q
    |||| ||||||||||||||| |||||||||| |||  ||| ||||||||||| | | || || |||| ||  |||||||||||||    
T  29922867 gagaacaaccaaacatgtcaaaatcaattctacactactagaatcaattttgactcctcaaaaagtggaagtaaacatacactaa 29922783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 59 - 140
Target Start/End: Original strand, 33047667 - 33047748
Alignment:
Q  59 agcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatacactaa 140  Q
    ||||| ||||||||| |||||||||||| |||||| |||||||||||||| || ||||  || ||||||||||||| |||||    
T  33047667 agcaatcaaacatgtgagaatcaattctacacctccaaaatcaattttggtccctctagaagcgaaaccaaacataaactaa 33047748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 7629829 - 7629751
Alignment:
Q  62 aaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatacactaa 140  Q
    ||||||||||| || |||||||||| |||||||| ||||||| ||||| | || || |||| |||||||||||||||||    
T  7629829 aaccaaacatgacaaaatcaattctacacctctagaatcaatcttggctcctccaaaagtggaaccaaacatacactaa 7629751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 136
Target Start/End: Original strand, 3716752 - 3716827
Alignment:
Q  61 caaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacataca 136  Q
    |||||||| |||||||||| ||||||  ||||||||||||||||||| ||| || || ||  ||||||||||||||    
T  3716752 caaccaaatatgtcagaattaattctatacctctaaaatcaattttgtcccctcaaaaagctaaaccaaacataca 3716827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 16518888 - 16518837
Alignment:
Q  3 aatgttttatgttttgatacattcatgtaaaagtgagttggactataaattt 54  Q
    |||| ||| ||||| ||||||||||||||||||||||||| |||||||||||    
T  16518888 aatgatttgtgtttggatacattcatgtaaaagtgagttgaactataaattt 16518837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 40582716 - 40582669
Alignment:
Q  62 aaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggc 109  Q
    |||||||||||| | |||||||||| |||||||| |||||||||||||    
T  40582716 aaccaaacatgttaaaatcaattctacacctctagaatcaattttggc 40582669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 8800678 - 8800724
Alignment:
Q  8 tttatgttttgatacattcatgtaaaagtgagttggactataaattt 54  Q
    ||||||||| ||||| ||||||||||||||||||| | |||||||||    
T  8800678 tttatgtttggatacgttcatgtaaaagtgagttgaattataaattt 8800724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 11504046 - 11504084
Alignment:
Q  12 tgttttgatacattcatgtaaaagtgagttggactataa 50  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  11504046 tgttttaatacattcatgtaaaagtgagttgaactataa 11504084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 33019140 - 33019182
Alignment:
Q  12 tgttttgatacattcatgtaaaagtgagttggactataaattt 54  Q
    ||||| ||| ||||||||||||||||||||| |||||||||||    
T  33019140 tgtttggatgcattcatgtaaaagtgagttgaactataaattt 33019182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 1976845 - 1976890
Alignment:
Q  9 ttatgttttgatacattcatgtaaaagtgagttggactataaattt 54  Q
    |||||||| ||||||||||||||||||||||||  || ||||||||    
T  1976845 ttatgtttggatacattcatgtaaaagtgagttcaacaataaattt 1976890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 15220841 - 15220886
Alignment:
Q  8 tttatgttttgatacattcatgtaaaagtgagttggactataaatt 53  Q
    ||||||||| ||||||||||||| ||||||||||| || |||||||    
T  15220841 tttatgtttggatacattcatgttaaagtgagttgaacaataaatt 15220886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 37420317 - 37420358
Alignment:
Q  64 ccaaacatgtcagaatcaattcttcacctctaaaatcaattt 105  Q
    |||||||||||| |||||||||| |||||||| |||||||||    
T  37420317 ccaaacatgtcaaaatcaattctacacctctagaatcaattt 37420358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 42774947 - 42775000
Alignment:
Q  56 gagagcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggc 109  Q
    |||||||||  ||||||||| ||||||||||  ||||||| |||||||||||||    
T  42774947 gagagcaacggaacatgtcaaaatcaattctatacctctagaatcaattttggc 42775000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 15928551 - 15928595
Alignment:
Q  61 caaccaaacatgtcagaatcaattcttcacctctaaaatcaattt 105  Q
    ||||||||||||||| |||||||||| |||||| | |||||||||    
T  15928551 caaccaaacatgtcaaaatcaattctacacctccagaatcaattt 15928595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 283
Target Start/End: Complemental strand, 37539203 - 37539167
Alignment:
Q  247 atttttaagtgttcaaatctacatgtatttggaacac 283  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  37539203 attttcaagtgttcaaatctacatgtagttggaacac 37539167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 37561671 - 37561599
Alignment:
Q  65 caaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatacac 137  Q
    ||||||||||| |||||||| | |||||||| ||||||||  | | |||| || | |||||||||||||||||    
T  37561671 caaacatgtcaaaatcaattttacacctctagaatcaattccgcctcatccaaaattgaaaccaaacatacac 37561599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 43501118 - 43501086
Alignment:
Q  54 ttgagagcaaccaaacatgtcagaatcaattct 86  Q
    |||| ||||||||||||||||||||||||||||    
T  43501118 ttgaaagcaaccaaacatgtcagaatcaattct 43501086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 43717307 - 43717235
Alignment:
Q  64 ccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacataca 136  Q
    |||||||||||| |||||||||| ||| |||| ||||||||||  | | || || ||||||||||||| ||||    
T  43717307 ccaaacatgtcaaaatcaattctacacatctagaatcaattttaacacctccaaaagtgaaaccaaacgtaca 43717235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 300
Target Start/End: Complemental strand, 35483387 - 35483324
Alignment:
Q  237 attaaccttgatttttaagtgttcaaatctacatgtatttggaacacctgaaatcgtggttaat 300  Q
    |||||||||||| ||  ||||||||||||||||| || ||||||||||||||||| ||||||||    
T  35483387 attaaccttgatcttccagtgttcaaatctacatatagttggaacacctgaaatcatggttaat 35483324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 13384771 - 13384814
Alignment:
Q  61 caaccaaacatgtcagaatcaattcttcacctctaaaatcaatt 104  Q
    |||||||||||||||||||||||||| |||||| ||||||||||    
T  13384771 caaccaaacatgtcagaatcaattctacacctccaaaatcaatt 13384814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 32927993 - 32927951
Alignment:
Q  12 tgttttgatacattcatgtaaaagtgagttggactataaattt 54  Q
    ||||| ||||||||||||||||||||||||| |||||||||||    
T  32927993 tgtttggatacattcatgtaaaagtgagttgaactataaattt 32927951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 139
Target Start/End: Original strand, 39648258 - 39648340
Alignment:
Q  57 agagcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacatacacta 139  Q
    |||| |||||||||||||| |||||||| | || ||||| ||||||||||| | | ||||| |||| ||||||||||| ||||    
T  39648258 agagaaaccaaacatgtcaaaatcaattatacatctctagaatcaattttgactcctctaaaagtgtaaccaaacatatacta 39648340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 136
Target Start/End: Original strand, 15677907 - 15677990
Alignment:
Q  53 tttgagagcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacataca 136  Q
    ||||| |||||||||||||||||||||||||| | || ||| | ||||||||||  ||| | ||  |||| |||||||||||||    
T  15677907 tttgaaagcaaccaaacatgtcagaatcaattgtacaactccacaatcaattttaacccctgtagaagtggaaccaaacataca 15677990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 3120518 - 3120576
Alignment:
Q  59 agcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaa 117  Q
    ||||||||||||| | ||||  |||||| |||||||||||||||||||| ||| |||||    
T  3120518 agcaaccaaacatattagaactaattctacacctctaaaatcaattttgacccctctaa 3120576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 134
Target Start/End: Complemental strand, 8700830 - 8700754
Alignment:
Q  57 agagcaaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcc-catctaatagtgaaaccaaacata 134  Q
    |||| |||||||||||||| |||||||||| ||| | |||||| |||||||||  |||| |||||||||||||||||||    
T  8700830 agagaaaccaaacatgtca-aatcaattctacacatttaaaattaattttggctacatc-aatagtgaaaccaaacata 8700754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 13929678 - 13929711
Alignment:
Q  9 ttatgttttgatacattcatgtaaaagtgagttg 42  Q
    ||||||||||||||||||||||||||||| ||||    
T  13929678 ttatgttttgatacattcatgtaaaagtgggttg 13929711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 298
Target Start/End: Original strand, 40181370 - 40181431
Alignment:
Q  237 attaaccttgatttttaagtgttcaaatctacatgtatttggaacacctgaaatcgtggtta 298  Q
    ||||||| | ||||| | |||||||||||  |||||| |||||| |||||||||||||||||    
T  40181370 attaaccatcattttcatgtgttcaaatcctcatgtagttggaatacctgaaatcgtggtta 40181431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 8252762 - 8252714
Alignment:
Q  64 ccaaacatgtcagaatcaattcttcacctctaaaatcaattttggccca 112  Q
    |||||||||||| ||||| |||| |||||||| ||||||||| ||||||    
T  8252762 ccaaacatgtcaaaatcagttctacacctctagaatcaatttcggccca 8252714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 32101168 - 32101132
Alignment:
Q  18 gatacattcatgtaaaagtgagttggactataaattt 54  Q
    |||||||| |||||||||||||||| |||||||||||    
T  32101168 gatacatttatgtaaaagtgagttgaactataaattt 32101132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 38335851 - 38335887
Alignment:
Q  18 gatacattcatgtaaaagtgagttggactataaattt 54  Q
    |||||||||||||||||||||||| || |||||||||    
T  38335851 gatacattcatgtaaaagtgagttagaatataaattt 38335887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0971 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0971
Description:

Target: scaffold0971; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 1807 - 1877
Alignment:
Q  66 aaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacataca 136  Q
    ||||| |||| |||||||| | ||||| |  ||||||||||| | ||||||||||||||| ||||||||||    
T  1807 aaacacgtcaaaatcaattttgcacctgttgaatcaattttgcctcatctaatagtgaaatcaaacataca 1877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0899 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0899
Description:

Target: scaffold0899; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 593 - 523
Alignment:
Q  66 aaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacataca 136  Q
    |||||||||| |||||||| | |||||||  ||||||||||| | ||||||| ||| ||| ||||||||||    
T  593 aaacatgtcaaaatcaattgtgcacctcttgaatcaattttgcctcatctaaaagtaaaatcaaacataca 523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University