View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7849_high_6 (Length: 319)
Name: NF7849_high_6
Description: NF7849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7849_high_6 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 319
Target Start/End: Complemental strand, 42443745 - 42443449
Alignment:
| Q |
18 |
aattaggtggttaacaataattaaaaagatccaaatttgttcccaacaataattataaagagacgatttgatttttacaacaaaaa-atccttaaataat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
42443745 |
aattaggtggttaacaataattaaaaagatccaaatttgttcccaacaataattataaagagacgatttgatttttacaacaaaaacatccttaaataat |
42443646 |
T |
|
| Q |
117 |
ttattcttcaataaacaatcaatttttattctttcacattcaagcaaccaccgtctacataaataaatatatatcattgtaaatttgtaactaagaatta |
216 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42443645 |
ttattcttcaaaaaacaatcaatttttattctttcacattcaaacaaccatcgtctacataa------atatatcattgtaaatttgtaactaagaatta |
42443552 |
T |
|
| Q |
217 |
agaaatgctaccattatttttaattatttgtacaaccattctttttaaagattaaattgtctccttttaattattgataggacaataccttcttctttaa |
316 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42443551 |
agaaatactaccattatttttaattatttgtacaaccattctttttaaagattaaattgtctccttttaattattgataggacaataccttcttctttaa |
42443452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University