View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7849_low_10 (Length: 310)
Name: NF7849_low_10
Description: NF7849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7849_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 8457697 - 8457977
Alignment:
| Q |
16 |
agatattcaccaaaatatgtgaaagaatatattgaaggagcaaagccactgttatctgttggggagtattgggatacatgcaactacaacggttctactt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8457697 |
agatattcaccaaaatatgtgaaagaatatattgaaggaccaaagccaatgttatctgttggggagtattgggatacatgcaactacaacggttctactt |
8457796 |
T |
|
| Q |
116 |
tggactataaccaaggtatactgcttaaaattctaattcatcaaataaatgaatactttttggttactaagtatatgaatacattggcctttcaatattt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8457797 |
tggactataaccaaggtatactgcttaaaattctaattcatcaaataaatgaatactttttggttactaagtatatgaatacattggcctttcaatattt |
8457896 |
T |
|
| Q |
216 |
ctttttcattttacactcagctctcttattttttactctttgcagatagtcatagacaacgaataatcaattggattgatg |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8457897 |
ctttttcattttacactcagctctcttattttttactctttgcagataaccatagacaacgaataatcaattggattgatg |
8457977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 6827637 - 6827363
Alignment:
| Q |
19 |
tattcaccaaaatatgtgaaagaatatattgaaggagcaaagccactgttatctgttggggagtattgggatacatgcaactacaacggttctactttgg |
118 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||| | |||||||||||||| |||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
6827637 |
tattcaccaaaatatgttaaagactatattgaaggagcacaaccactgttatctgtcggggagtatttggatgtttgcaactacaacggttctactttgg |
6827538 |
T |
|
| Q |
119 |
actataaccaaggtatactgcttaaaattctaattcatcaaataaatgaatactttttggttactaagtatatgaatacattggcctttcaatatttctt |
218 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||| |
|
|
| T |
6827537 |
actataaccaaggtat---gcttaaaattctcattcatgaaataaatgaatactttttggttactaagtatgtgaatacattaccctttcaatacttctt |
6827441 |
T |
|
| Q |
219 |
tttcattttacactcagctctcttattttttactctttgcagatagtcatagacaacgaataatcaattggattgatg |
296 |
Q |
| |
|
|| |||| |||||| ||||| ||||||||||||| ||||||||||| ||||| |||||||||||||| |||||||||| |
|
|
| T |
6827440 |
ttgcattgtacacttagctcacttattttttactttttgcagatagccataggcaacgaataatcaaatggattgatg |
6827363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 9822507 - 9822781
Alignment:
| Q |
19 |
tattcaccaaaatatgtgaaagaatatattgaaggagcaaagccactgttatctgttggggagtattgggatacatgcaactacaacggttctactttgg |
118 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||| | |||||||||||||| |||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
9822507 |
tattcaccaaaatatgttaaagactatattgaaggagcacaaccactgttatctgtcggggagtatttggatgtttgcaactacaacggttctactttgg |
9822606 |
T |
|
| Q |
119 |
actataaccaaggtatactgcttaaaattctaattcatcaaataaatgaatactttttggttactaagtatatgaatacattggcctttcaatatttctt |
218 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||| |
|
|
| T |
9822607 |
actataaccaaggtat---gcttaaaattctcattcatgaaataaatgaatactttttggttactaagtatgtgaatacattaccctttcaatacttctt |
9822703 |
T |
|
| Q |
219 |
tttcattttacactcagctctcttattttttactctttgcagatagtcatagacaacgaataatcaattggattgatg |
296 |
Q |
| |
|
|| |||| |||||| ||||| ||||||||||||| ||||||||||| ||||| |||||||||||||| |||||||||| |
|
|
| T |
9822704 |
ttgcattgtacacttagctcacttattttttactttttgcagatagccataggcaacgaataatcaaatggattgatg |
9822781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 27964280 - 27964065
Alignment:
| Q |
19 |
tattcaccaaaatatgtgaaagaatatattgaaggagcaaagccactgttatctgttggggagtattgggatacatgcaactacaacggttctactttgg |
118 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
27964280 |
tattcacctaaatatgttaaagagtatattgaaggagcaaagccactgttatctgtcggggagtatttggatgtttgcaactacaacggttctactttgg |
27964181 |
T |
|
| Q |
119 |
actataaccaaggtatactgcttaaaattctaattcatcaaataaatgaatactttttggttactaagtatatgaatacattggcctttcaatatttctt |
218 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||| |
|
|
| T |
27964180 |
actataaccaaggta---tgcttaaaattctcattcat-gaataaatgaatactttttggttactaagtatgtgaatacattaccctttcaatacttctt |
27964085 |
T |
|
| Q |
219 |
tttcattttacactcagctc |
238 |
Q |
| |
|
|| |||| |||||| ||||| |
|
|
| T |
27964084 |
ttgcattgtacacttagctc |
27964065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 18361425 - 18361362
Alignment:
| Q |
157 |
caaataaatgaatactttttggttactaagtatatgaatacattggcctttcaatatttctttt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||| |||||||||| ||||||| |
|
|
| T |
18361425 |
caaataaatgaatactttttggttactaagcatgtgaatacattaccctttcaatacttctttt |
18361362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University