View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7849_low_12 (Length: 281)

Name: NF7849_low_12
Description: NF7849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7849_low_12
NF7849_low_12
[»] chr8 (6 HSPs)
chr8 (1-262)||(2749862-2750141)
chr8 (1-41)||(7058190-7058230)
chr8 (1-41)||(7614144-7614184)
chr8 (1-41)||(32987394-32987434)
chr8 (1-40)||(39022052-39022091)
chr8 (1-41)||(8550580-8550620)
[»] chr5 (6 HSPs)
chr5 (1-41)||(13362846-13362886)
chr5 (1-41)||(23335656-23335696)
chr5 (1-41)||(28070102-28070142)
chr5 (2-41)||(18465506-18465545)
chr5 (1-41)||(16668743-16668783)
chr5 (1-41)||(2827016-2827056)
[»] chr1 (6 HSPs)
chr1 (1-41)||(23320034-23320074)
chr1 (2-41)||(37639418-37639457)
chr1 (1-41)||(18056860-18056900)
chr1 (1-41)||(22348115-22348155)
chr1 (1-41)||(30802472-30802512)
chr1 (1-40)||(45889673-45889712)
[»] chr7 (6 HSPs)
chr7 (2-41)||(5757463-5757502)
chr7 (2-41)||(32090654-32090693)
chr7 (1-41)||(30428949-30428989)
chr7 (1-41)||(33798007-33798047)
chr7 (1-41)||(46573449-46573489)
chr7 (1-41)||(46024103-46024143)
[»] chr4 (3 HSPs)
chr4 (1-41)||(51837040-51837080)
chr4 (1-41)||(22181194-22181234)
chr4 (1-41)||(27764316-27764356)
[»] chr3 (5 HSPs)
chr3 (1-41)||(50754082-50754122)
chr3 (1-41)||(51362387-51362427)
chr3 (1-41)||(52987599-52987639)
chr3 (1-41)||(16277363-16277403)
chr3 (1-41)||(39099273-39099313)
[»] chr2 (1 HSPs)
chr2 (1-41)||(18298060-18298100)
[»] chr6 (3 HSPs)
chr6 (2-41)||(18611265-18611304)
chr6 (1-37)||(877288-877324)
chr6 (1-41)||(24737640-24737680)
[»] scaffold0194 (1 HSPs)
scaffold0194 (1-41)||(27683-27723)


Alignment Details
Target: chr8 (Bit Score: 178; Significance: 5e-96; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 2750141 - 2749862
Alignment:
Q  1 tttgatttggtgtagtttgagaagtctatgattattacacgag--gaaattgccagaatcaaattggattttgactctaatgtcaaaatttgtaatgaag 98  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  2750141 tttgatttggtgtagtttgagaagtctatgattattacacgagaggaaattgtcagaatcaaattggattttgactctaatttcaaaatttgtaatgaag 2750042  T
Q  99 aaatcgaatttaatgcctaat--nnnnnnngataaagagtgtttacaattaggtgcttgttagtaaaaatttataaggagtgatgtg------------- 183  Q
    |||||||||||||||||||||         |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||                 
T  2750041 aaatcgaatttaatgcctaataaaaaaaatgataaagagtgtttacgattaggtgcttgttagtaaaaatttataaggagtgatgtgttagtataaaatt 2749942  T
Q  184 -taaatcatgtttaggcgtcgggatggaggagttagatatttgtctatcacaaattataaagggtgacgtgcacacgtga 262  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2749941 ataaatcatgtttaggcgtcgggatggaggagttagatatttgtctatcacaaattataaagggtgacgtgcacacgtga 2749862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7058230 - 7058190
Alignment:
Q  1 tttgatttggtgtagtttgagaagtctatgattattacacg 41  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  7058230 tttgatttggtgtagtttgagaagtctaggattattacacg 7058190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7614184 - 7614144
Alignment:
Q  1 tttgatttggtgtagtttgagaagtctatgattattacacg 41  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  7614184 tttgatttggtgtagtttgagaagcctatgattattacacg 7614144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 32987394 - 32987434
Alignment:
Q  1 tttgatttggtgtagtttgagaagtctatgattattacacg 41  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  32987394 tttgatttggtgtagtttgagaagcctaggattattacacg 32987434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 39022091 - 39022052
Alignment:
Q  1 tttgatttggtgtagtttgagaagtctatgattattacac 40  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  39022091 tttgatttggtgtagtttgagaagcctaggattattacac 39022052  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 8550620 - 8550580
Alignment:
Q  1 tttgatttggtgtagtttgagaagtctatgattattacacg 41  Q
    |||||||||||||| |||||||||  |||||||||||||||    
T  8550620 tttgatttggtgtaatttgagaagcttatgattattacacg 8550580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 13362886 - 13362846
Alignment:
Q  1 tttgatttggtgtagtttgagaagtctatgattattacacg 41  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  13362886 tttgatttggtgtagtttgagaagcctatgattattacacg 13362846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 23335656 - 23335696
Alignment:
Q  1 tttgatttggtgtagtttgagaagtctatgattattacacg 41  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  23335656 tttgatttggtgtagtttgagaagcctatgattattacacg 23335696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 28070102 - 28070142
Alignment:
Q  1 tttgatttggtgtagtttgagaagtctatgattattacacg 41  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  28070102 tttgatttggtgtagtttgagaagtctaggattattacacg 28070142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 18465506 - 18465545
Alignment:
Q  2 ttgatttggtgtagtttgagaagtctatgattattacacg 41  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  18465506 ttgatttggtgtagtttgagaagtctaagattattacacg 18465545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 16668743 - 16668783
Alignment:
Q  1 tttgatttggtgtagtttgagaagtctatgattattacacg 41  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  16668743 tttgatttggtgtagtttgagaagcctaggattattacacg 16668783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 2827016 - 2827056
Alignment:
Q  1 tttgatttggtgtagtttgagaagtctatgattattacacg 41  Q
    |||||||||||||||||||||||| ||| ||| ||||||||    
T  2827016 tttgatttggtgtagtttgagaagcctaagataattacacg 2827056  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 23320034 - 23320074
Alignment:
Q  1 tttgatttggtgtagtttgagaagtctatgattattacacg 41  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  23320034 tttgatttggtgtagtttgagaagtctaggattattacacg 23320074  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 37639457 - 37639418
Alignment:
Q  2 ttgatttggtgtagtttgagaagtctatgattattacacg 41  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  37639457 ttgatttggtgtagtttgagaagtctataattattacacg 37639418  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 18056900 - 18056860
Alignment:
Q  1 tttgatttggtgtagtttgagaagtctatgattattacacg 41  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  18056900 tttgatttggtgtagtttgagaagcctaggattattacacg 18056860  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 22348155 - 22348115
Alignment:
Q  1 tttgatttggtgtagtttgagaagtctatgattattacacg 41  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  22348155 tttgatttggtgtagtttgagaagcctaggattattacacg 22348115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 30802512 - 30802472
Alignment:
Q  1 tttgatttggtgtagtttgagaagtctatgattattacacg 41  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  30802512 tttgatttggtgtagtttgagaagcctaagattattacacg 30802472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 45889712 - 45889673
Alignment:
Q  1 tttgatttggtgtagtttgagaagtctatgattattacac 40  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  45889712 tttgatttggtgtagtttgagaagcctaagattattacac 45889673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 5757502 - 5757463
Alignment:
Q  2 ttgatttggtgtagtttgagaagtctatgattattacacg 41  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  5757502 ttgatttggtgtagtttgagaagtctaggattattacacg 5757463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 32090693 - 32090654
Alignment:
Q  2 ttgatttggtgtagtttgagaagtctatgattattacacg 41  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  32090693 ttgatttggtgtagtttgagaagcctatgattattacacg 32090654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 30428989 - 30428949
Alignment:
Q  1 tttgatttggtgtagtttgagaagtctatgattattacacg 41  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  30428989 tttgatttggtgtagtttgagaagcctaggattattacacg 30428949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 33798047 - 33798007
Alignment:
Q  1 tttgatttggtgtagtttgagaagtctatgattattacacg 41  Q
    ||||||||| |||||||||||||||||| ||||||||||||    
T  33798047 tttgatttgatgtagtttgagaagtctaggattattacacg 33798007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 46573449 - 46573489
Alignment:
Q  1 tttgatttggtgtagtttgagaagtctatgattattacacg 41  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  46573449 tttgatttggtgtagtttgagaagcctaggattattacacg 46573489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 46024143 - 46024103
Alignment:
Q  1 tttgatttggtgtagtttgagaagtctatgattattacacg 41  Q
    ||||||||  |||||||||||||||||| ||||||||||||    
T  46024143 tttgatttaatgtagtttgagaagtctaggattattacacg 46024103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 51837040 - 51837080
Alignment:
Q  1 tttgatttggtgtagtttgagaagtctatgattattacacg 41  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  51837040 tttgatttggtgtagtttgagaagcctaggattattacacg 51837080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 22181194 - 22181234
Alignment:
Q  1 tttgatttggtgtagtttgagaagtctatgattattacacg 41  Q
    |||||||||||||||||||||||  ||| ||||||||||||    
T  22181194 tttgatttggtgtagtttgagaaacctaggattattacacg 22181234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 27764356 - 27764316
Alignment:
Q  1 tttgatttggtgtagtttgagaagtctatgattattacacg 41  Q
    ||||||||||||||||||||||||  || ||||||||||||    
T  27764356 tttgatttggtgtagtttgagaagcgtaggattattacacg 27764316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 50754122 - 50754082
Alignment:
Q  1 tttgatttggtgtagtttgagaagtctatgattattacacg 41  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  50754122 tttgatttggtgtagtttgagaagcctaggattattacacg 50754082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 51362387 - 51362427
Alignment:
Q  1 tttgatttggtgtagtttgagaagtctatgattattacacg 41  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  51362387 tttgatttggtgtagtttgagaagcctaggattattacacg 51362427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 52987599 - 52987639
Alignment:
Q  1 tttgatttggtgtagtttgagaagtctatgattattacacg 41  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  52987599 tttgatttggtgtagtttgagaagcctaggattattacacg 52987639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 16277363 - 16277403
Alignment:
Q  1 tttgatttggtgtagtttgagaagtctatgattattacacg 41  Q
    ||||||||||||||||||||||||  || ||||||||||||    
T  16277363 tttgatttggtgtagtttgagaagcgtaggattattacacg 16277403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 39099313 - 39099273
Alignment:
Q  1 tttgatttggtgtagtttgagaagtctatgattattacacg 41  Q
    |||||||| ||||||||||||||| ||| ||||||||||||    
T  39099313 tttgatttagtgtagtttgagaagcctaggattattacacg 39099273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 18298060 - 18298100
Alignment:
Q  1 tttgatttggtgtagtttgagaagtctatgattattacacg 41  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  18298060 tttgatttggtgtagtttgagaagcctaggattattacacg 18298100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 18611304 - 18611265
Alignment:
Q  2 ttgatttggtgtagtttgagaagtctatgattattacacg 41  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  18611304 ttgatttggtgtggtttgagaagcctatgattattacacg 18611265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 877324 - 877288
Alignment:
Q  1 tttgatttggtgtagtttgagaagtctatgattatta 37  Q
    ||||||||||||||||||||||||  |||||||||||    
T  877324 tttgatttggtgtagtttgagaagcttatgattatta 877288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 24737640 - 24737680
Alignment:
Q  1 tttgatttggtgtagtttgagaagtctatgattattacacg 41  Q
    |||||||||||||||||| ||||| ||| ||||||||||||    
T  24737640 tttgatttggtgtagtttaagaagcctaggattattacacg 24737680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 27723 - 27683
Alignment:
Q  1 tttgatttggtgtagtttgagaagtctatgattattacacg 41  Q
    |||||||||||||||||||||||| |||  |||||||||||    
T  27723 tttgatttggtgtagtttgagaagcctagaattattacacg 27683  T

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