View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7849_low_13 (Length: 268)
Name: NF7849_low_13
Description: NF7849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7849_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 25 - 260
Target Start/End: Original strand, 39387760 - 39387997
Alignment:
| Q |
25 |
tataaaatatatatgagggataaggtgtagtactgtaaagtgatcttgtataatgtgaccgtgagtaacgttaaggtttatcagtagta------ccaaa |
118 |
Q |
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| T |
39387760 |
tataaaatatatatgggggataaggtgtag-acggtaaagttatcttctataatgtgaccgtgagtaacgttaaggtttatcagtagtagtagtaccaaa |
39387858 |
T |
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| Q |
119 |
gacctagtaataataattattaaaaaataatgattaaatgtaacacccagaattccgacacaaatgcttgcacatgaagctagcacatggtcgaggtggt |
218 |
Q |
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| T |
39387859 |
gacctagtaataataatta---aaaaataatgattaaatgtaacacccagaattccgacacaaatgcttgcacatgaagctagcacatggtcgaggtggt |
39387955 |
T |
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| Q |
219 |
gtgaagcattggaataatactaacgataacagtatctctgct |
260 |
Q |
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| T |
39387956 |
gtgaagcattggaataatactaacgataacagtatctttgct |
39387997 |
T |
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