View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7849_low_15 (Length: 224)

Name: NF7849_low_15
Description: NF7849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7849_low_15
NF7849_low_15
[»] chr2 (10 HSPs)
chr2 (2-203)||(12012207-12012408)
chr2 (1-203)||(12005779-12005981)
chr2 (26-203)||(11987142-11987319)
chr2 (26-203)||(12018537-12018714)
chr2 (12-198)||(10336119-10336308)
chr2 (12-152)||(9283902-9284042)
chr2 (26-128)||(10353413-10353515)
chr2 (12-136)||(9321254-9321378)
chr2 (20-203)||(9274801-9274981)
chr2 (81-123)||(8579228-8579270)
[»] chr1 (4 HSPs)
chr1 (12-176)||(29453001-29453165)
chr1 (20-186)||(29443005-29443174)
chr1 (12-144)||(29423546-29423678)
chr1 (12-136)||(29467517-29467641)
[»] chr8 (1 HSPs)
chr8 (12-176)||(41966411-41966575)
[»] chr3 (1 HSPs)
chr3 (79-176)||(37462843-37462940)
[»] chr7 (1 HSPs)
chr7 (76-121)||(45238318-45238363)


Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 2 - 203
Target Start/End: Complemental strand, 12012408 - 12012207
Alignment:
Q  2 ttcttcaccgttatccaatgaagggaattctcaacaaaaacccccatggttagagcatagcaaagaacatagtctatactaggaagtactttccacgagt 101  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12012408 ttcttcaccgttatccaatgaagagaattctcaacaaaaactcccatggttagagcatagcaaagaacatagtctatactaggaagtactttccacgagt 12012309  T
Q  102 ttgttttcgaggtgaagagtctgacatatgaatcaaaagtagagttttgtaaatcaacgaaccaagagattctgataagcttgtagtcggaggataaagg 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12012308 ttgttttcgaggtgaagagtctgacatatgaatcaaaagtagagttttgtaaatcaacgaaccaagagattctgataagcttgtagtcggaggataaagg 12012209  T
Q  202 at 203  Q
    ||    
T  12012208 at 12012207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 12005981 - 12005779
Alignment:
Q  1 tttcttcaccgttatccaatgaagggaattctcaacaaaaacccccatggttagagcatagcaaagaacatagtctatactaggaagtactttccacgag 100  Q
    |||||| ||| | ||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||| || || ||||||||||||||||| |||    
T  12005981 tttcttgaccatcatccagtgaagagaattctcaacaaaaacccccatggttagagcatagcaaataacatactcaatgctaggaagtactttccatgag 12005882  T
Q  101 tttgttttcgaggtgaagagtctgacatatgaatcaaaagtagagttttgtaaatcaacgaaccaagagattctgataagcttgtagtcggaggataaag 200  Q
    ||||||||||| |||||||| || |||||||||||||||||| |||||  |||||| | |||||||||||||||||||||||||||||||||||||||||    
T  12005881 tttgttttcgaagtgaagagactcacatatgaatcaaaagtaaagtttgttaaatcgatgaaccaagagattctgataagcttgtagtcggaggataaag 12005782  T
Q  201 gat 203  Q
    |||    
T  12005781 gat 12005779  T

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Target: chr2; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 11987319 - 11987142
Alignment:
Q  26 gaattctcaacaaaaacccccatggttagagcatagcaaagaacatagtctatactaggaagtactttccacgagtttgttttcgaggtgaagagtctga 125  Q
    ||||||||||||||||| ||||||||     ||| ||||||| |||| |||||| |||||||||||||||||||||| || |||||||||||||||||||    
T  11987319 gaattctcaacaaaaactcccatggtatttacatggcaaagagcatactctatattaggaagtactttccacgagttcgtcttcgaggtgaagagtctga 11987220  T
Q  126 catatgaatcaaaagtagagttttgtaaatcaacgaaccaagagattctgataagcttgtagtcggaggataaaggat 203  Q
    |||||||||||||||||  ||| |||| |||||| ||||||||||||||||| || ||||| ||||| || |||||||    
T  11987219 catatgaatcaaaagtacggttgtgtagatcaacaaaccaagagattctgatgagtttgtaatcggatgaaaaaggat 11987142  T

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Target: chr2; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 12018714 - 12018537
Alignment:
Q  26 gaattctcaacaaaaacccccatggttagagcatagcaaagaacatagtctatactaggaagtactttccacgagtttgttttcgaggtgaagagtctga 125  Q
    ||||||||||||||||| ||||| ||     ||||| ||||| |||||||||||||||||||||||||||||||||| ||||| |||||  |||||||||    
T  12018714 gaattctcaacaaaaactcccattgtattgtcataggaaagagcatagtctatactaggaagtactttccacgagttcgtttttgaggtatagagtctga 12018615  T
Q  126 catatgaatcaaaagtagagttttgtaaatcaacgaaccaagagattctgataagcttgtagtcggaggataaaggat 203  Q
    |||||||||||||||||  ||| |||| |||||| |||||||||||||||| ||| || || || ||||| |||||||    
T  12018614 catatgaatcaaaagtacggttgtgtagatcaacaaaccaagagattctgacaagtttataatcagaggacaaaggat 12018537  T

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Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 10336119 - 10336308
Alignment:
Q  12 ttatccaatgaagggaattctcaacaaaaacccccatggttagagcatagcaaagaacatagtctatactaggaagtactttccacgagtttgttttcga 111  Q
    ||||||| ||||| ||||||||||||||||| ||||||||||||| |||| |||||| |||    |||   ||||||  |||||| ||||||||||||||    
T  10336119 ttatccagtgaagagaattctcaacaaaaacacccatggttagagtatagtaaagaatatacggcatatccggaagtgttttccaagagtttgttttcga 10336218  T
Q  112 ggtgaagagtctgacatatga---atcaaaagtagagttttgtaaatcaacgaaccaagagattctgataagcttgtagtcggaggataa 198  Q
    | |||||||| | | || |||   ||||||||||  || ||||| ||| |||||||||||||||||||  || ||||| |||| ||||||    
T  10336219 gctgaagagtgtcaaatgtgaattatcaaaagtatggtgttgtagatcgacgaaccaagagattctgaggagtttgtaatcggcggataa 10336308  T

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Target: chr2; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 152
Target Start/End: Complemental strand, 9284042 - 9283902
Alignment:
Q  12 ttatccaatgaagggaattctcaacaaaaacccccatggttagagcatagcaaagaacatagtctatactaggaagtactttccacgagtttgttttcga 111  Q
    ||||||| ||||  ||||||||||||||||||||||||| | |||||||| ||| |   |||   ||| |||||| || |||||||||||||||||| ||    
T  9284042 ttatccagtgaatagaattctcaacaaaaacccccatggcttgagcatagtaaacagtgtagggcataataggaattattttccacgagtttgttttgga 9283943  T
Q  112 ggtgaagagtctgacatatgaatcaaaagtagagttttgta 152  Q
    | ||||||||||| ||| ||||| | ||  |||||||||||    
T  9283942 gctgaagagtctggcatgtgaatgataaaaagagttttgta 9283902  T

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Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 10353413 - 10353515
Alignment:
Q  26 gaattctcaacaaaaacccccatggttagagcatagcaaagaacatagtctatactaggaagtactttccacgagtttgttttcgaggtgaagagtctga 125  Q
    ||||||||||||||||||||||| |||| ||||||| |||||  |||    | | |||||| ||||||||| |||||||||||| || ||||||||||||    
T  10353413 gaattctcaacaaaaacccccattgttaaagcatagtaaagagaataaggcaaattaggaattactttccatgagtttgttttcaagctgaagagtctga 10353512  T
Q  126 cat 128  Q
    |||    
T  10353513 cat 10353515  T

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Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 136
Target Start/End: Original strand, 9321254 - 9321378
Alignment:
Q  12 ttatccaatgaagggaattctcaacaaaaacccccatggttagagcatagcaaagaacatagtctatactaggaagtactttccacgagtttgttttcga 111  Q
    ||||||| ||||| ||||||||||||||||||||||||  | ||||||||  ||||   ||    ||||| |||| || |||||||||||||||| | ||    
T  9321254 ttatccagtgaagagaattctcaacaaaaacccccatgaattgagcatagataagagagtacggcatactgggaattattttccacgagtttgttataga 9321353  T
Q  112 ggtgaagagtctgacatatgaatca 136  Q
    | ||||||||||||||| |||||||    
T  9321354 gctgaagagtctgacatgtgaatca 9321378  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 203
Target Start/End: Original strand, 9274801 - 9274981
Alignment:
Q  20 tgaagggaattctcaacaaaaacccccatggttagagcatagcaaagaacatagtctatactaggaagtactttccacgagtttgttttcgaggtgaaga 119  Q
    ||||| |||||||||||||||| |||||||| | || ||||   |||| | ||    ||||| |||| || ||||||||||||||||||| || ||||||    
T  9274801 tgaagagaattctcaacaaaaatccccatggcttgaacatatttaagagcgtacggcatactgggaattattttccacgagtttgttttcaagctgaaga 9274900  T
Q  120 gtctgacatatgaatcaaaagtagagttttgtaaatcaacgaaccaagagattctgataagcttgtagtcggaggataaaggat 203  Q
    |||| |||| ||| |||||   |||||  |||| |||| | ||||| |||||||||| ||| || || |||  |||||||||||    
T  9274901 gtctcacatgtgattcaaa---agagtaatgtatatcagctaaccatgagattctgagaagtttataatcgccggataaaggat 9274981  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 8579270 - 8579228
Alignment:
Q  81 taggaagtactttccacgagtttgttttcgaggtgaagagtct 123  Q
    |||||||| ||||||||||||||||||| ||| ||||||||||    
T  8579270 taggaagtgctttccacgagtttgttttggagctgaagagtct 8579228  T

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Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 29453165 - 29453001
Alignment:
Q  12 ttatccaatgaagggaattctcaacaaaaacccccatggttagagcatagcaaagaacatagtctatactaggaagtactttccacgagtttgttttcga 111  Q
    ||||||| ||||| |||||||||||||||||||||   ||| ||| |||| ||||| | ||    |||||||||||  |||||||||||||  |||||||    
T  29453165 ttatccagtgaagagaattctcaacaaaaaccccctctgttcgaggataggaaagagcgtacggcatactaggaaggtctttccacgagttcattttcga 29453066  T
Q  112 ggtgaagagtctgacatatgaatcaaaagtagagttttgtaaatcaacgaaccaagagattctga 176  Q
    | |||||||||| |||| ||||||| ||||||||| ||||  ||||||||  |||||||||||||    
T  29453065 gctgaagagtctcacatgtgaatcagaagtagagtattgtggatcaacgatacaagagattctga 29453001  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 29443174 - 29443005
Alignment:
Q  20 tgaagggaattctcaacaaaaacccccatggtta---gagcatagcaaagaacatagtctatactaggaagtactttccacgagtttgttttcgaggtga 116  Q
    ||||||||||||||||||||| ||||||| |||    |||||||| |||||   ||    ||| |||||||| |||||||||||||||||||  || |||    
T  29443174 tgaagggaattctcaacaaaatcccccattgttcttcgagcataggaaagagtgtaaggcatagtaggaagttctttccacgagtttgttttgaagctga 29443075  T
Q  117 agagtctgacatatgaatcaaaagtagagttttgtaaatcaacgaaccaagagattctgataagcttgta 186  Q
    ||||||| |||| ||| ||||||||||||| |||||   ||||||| |||||||||||||| || |||||    
T  29443074 agagtctaacatgtgattcaaaagtagagtgttgtaccccaacgaagcaagagattctgatgagtttgta 29443005  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 29423546 - 29423678
Alignment:
Q  12 ttatccaatgaagggaattctcaacaaaaacccccatggttagagcatagcaaagaacatagtctatactaggaagtactttccacgagtttgttttcga 111  Q
    ||||||| ||||| ||||||||||||||||||||||| ||| |||||||| |||||   ||    ||  |||||||| ||||||||||||||||||||||    
T  29423546 ttatccagtgaagagaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttccacgagtttgttttcga 29423645  T
Q  112 ggtgaagagtctgacatatgaatcaaaagtaga 144  Q
    | ||||||||||  ||| ||| ||| |||||||    
T  29423646 gctgaagagtctcgcatgtgattcagaagtaga 29423678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 12 - 136
Target Start/End: Complemental strand, 29467641 - 29467517
Alignment:
Q  12 ttatccaatgaagggaattctcaacaaaaacccccatggttagagcatagcaaagaacatagtctatactaggaagtactttccacgagtttgttttcga 111  Q
    ||||||||||||| |||||||||||||||||| |||||||| ||| |||| |||||   ||    ||||||| |||||||||||| ||||| ||||||||    
T  29467641 ttatccaatgaagagaattctcaacaaaaaccaccatggtttgaggatagtaaagagagtacggcatactagaaagtactttccaggagttcgttttcga 29467542  T
Q  112 ggtgaagagtctgacatatgaatca 136  Q
    | |||||||| | |||| |||||||    
T  29467541 gctgaagagtgtaacatgtgaatca 29467517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 41966575 - 41966411
Alignment:
Q  12 ttatccaatgaagggaattctcaacaaaaacccccatggttagagcatagcaaagaacatagtctatactaggaagtactttccacgagtttgttttcga 111  Q
    ||||||| ||||| ||||| | ||||||||||||||||||| |||||||| ||||| ||||    || || |||| || ||||||||||||  |||| ||    
T  41966575 ttatccagtgaagagaattgtgaacaaaaacccccatggtttgagcatagtaaagagcatacggcattctgggaattattttccacgagttgtttttaga 41966476  T
Q  112 ggtgaagagtctgacatatgaatcaaaagtagagttttgtaaatcaacgaaccaagagattctga 176  Q
    | | || || ||||||| ||||||||||||||||  ||||  |||||   |||||||||||||||    
T  41966475 gctaaatagcctgacatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctga 41966411  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 176
Target Start/End: Original strand, 37462843 - 37462940
Alignment:
Q  79 actaggaagtactttccacgagtttgttttcgaggtgaagagtctgacatatgaatcaaaagtagagttttgtaaatcaacgaaccaagagattctga 176  Q
    |||||||| || |||||||||||||||||| ||| |||||||||| |||| || |||| ||  || |||||||| ||| |  | ||||||||||||||    
T  37462843 actaggaactattttccacgagtttgttttggagctgaagagtctcacatgtggatcataaaaagggttttgtagatcgagaagccaagagattctga 37462940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 45238318 - 45238363
Alignment:
Q  76 tatactaggaagtactttccacgagtttgttttcgaggtgaagagt 121  Q
    |||||||||||||||||||||||| ||  |||| ||||||||||||    
T  45238318 tatactaggaagtactttccacgaattcatttttgaggtgaagagt 45238363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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