View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7849_low_16 (Length: 211)
Name: NF7849_low_16
Description: NF7849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7849_low_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 9436961 - 9437092
Alignment:
| Q |
1 |
tcaccaccgagaaagggtgttgtacaacccatatccaccaccgaaccaccgccaccttggaactacaccaaaggccgtcggcggtctatgaccacccaaa |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9436961 |
tcaccaccgagaaagggtgttgtgcaacccatatccaccaccaaaccaccgccaccttggaactacaccaaaggccgtcggcggtctacgaccacccaaa |
9437060 |
T |
|
| Q |
101 |
accaaactcacacaaaggatttacagatctgc |
132 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |
|
|
| T |
9437061 |
accaaactcacacaaaggatttacatatctgc |
9437092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 15118364 - 15118245
Alignment:
| Q |
1 |
tcaccaccgagaaagggtgttgtacaacccatatccaccaccgaaccaccgccaccttggaactacaccaaaggccgtcggcggtctatgaccacccaaa |
100 |
Q |
| |
|
|||| ||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||| | | |||||||| ||||||||||| |
|
|
| T |
15118364 |
tcactaccgagaaatggtgttgcgcaacccatatccaccaccaaaccaccgccaccttggaattacaccaaaggctgccagcggtctacgaccacccaaa |
15118265 |
T |
|
| Q |
101 |
accaaactcacacaaaggat |
120 |
Q |
| |
|
||||||| | |||| ||||| |
|
|
| T |
15118264 |
accaaacactcacagaggat |
15118245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 5051934 - 5052030
Alignment:
| Q |
1 |
tcaccaccgagaaagggtgttgtacaacccatatccaccaccgaaccaccgccaccttggaactacaccaaaggccgtcggcggtctatgaccaccc |
97 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||| ||||||||||| ||||||| || ||||||||||| ||||||||| |||||||| |
|
|
| T |
5051934 |
tcaccaccgagaaagggtgttgcgcaacccatatcaaccaccaaaccaccgccatcttggaattataccaaaggccgctggcggtctacgaccaccc |
5052030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 50590200 - 50590263
Alignment:
| Q |
44 |
aaccaccgccaccttggaactacaccaaaggccgtcggcggtctatgaccacccaaaaccaaac |
107 |
Q |
| |
|
|||| |||| ||||||||| |||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
50590200 |
aaccgccgctaccttggaattacaccaaaggccgccggcggtctacgaccacccaaaaccaaac |
50590263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University