View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7849_low_2 (Length: 610)

Name: NF7849_low_2
Description: NF7849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7849_low_2
NF7849_low_2
[»] chr6 (4 HSPs)
chr6 (255-493)||(7326481-7326710)
chr6 (1-174)||(7326123-7326296)
chr6 (190-255)||(7326393-7326453)
chr6 (197-240)||(6922703-6922746)
[»] chr4 (5 HSPs)
chr4 (176-240)||(35130658-35130723)
chr4 (190-240)||(13538317-13538367)
chr4 (198-239)||(49479453-49479494)
chr4 (176-240)||(17882291-17882355)
chr4 (177-240)||(35010431-35010495)
[»] scaffold0166 (1 HSPs)
scaffold0166 (197-241)||(35852-35896)
[»] chr7 (2 HSPs)
chr7 (176-240)||(30746010-30746074)
chr7 (190-240)||(9667293-9667343)
[»] chr5 (1 HSPs)
chr5 (197-241)||(24793469-24793513)
[»] chr2 (1 HSPs)
chr2 (197-237)||(29097888-29097928)
[»] chr3 (3 HSPs)
chr3 (176-242)||(32594558-32594625)
chr3 (197-240)||(52093594-52093637)
chr3 (197-240)||(52093749-52093792)
[»] chr8 (1 HSPs)
chr8 (207-241)||(2276274-2276308)


Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 255 - 493
Target Start/End: Original strand, 7326481 - 7326710
Alignment:
Q  255 acaaacaaaaatggcatcagtaaatgttttttccatgacataaataaggatagttttatcccttcatgtcagttagctacatacatacatgtaatgtaac 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||       ||||||||||||||||||||    
T  7326481 acaaacaaaaatggcatcagtaaatgttttttccatgacataaataaggataattttatcccttcatgtcagt-------atacatacatgtaatgtaac 7326573  T
Q  355 aaatttagacaaatgttcataaaacaaatagcaacaaaggagatttgaatgtaataataacatcattacattcaattttcagtccaaaagaaatataata 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  | |||||||||||||||||||||||||||||||||||||    
T  7326574 aaatttagacaaatgttcataaaacaaatagcaacaaaggagatttgcatgtaataata--aacattacattcaattttcagtccaaaagaaatataata 7326671  T
Q  455 agcaatttatcaaactatttattccacttaaaaaccaag 493  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7326672 agcaatttatcaaactatttattccacttaaaaaccaag 7326710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 7326123 - 7326296
Alignment:
Q  1 ggaaacactcacctatattcccaacaaaattgaggatgtttataacaaaataagtatttttatttcaaaagcaaaataaggcataatctaaaatgttgtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7326123 ggaaacactcacctatattcccaacaaaattgaggatgtttataacaaaataagtatttttatttcaaaagcaaaataaggcctaatctaaaatgttgtt 7326222  T
Q  101 tgctgcaaataagtgaaattagcttcatttcataccgaaaaatcaagcacattgacaacgcaagctattagcac 174  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7326223 tgctgcaaataagtgaagttagcttcatttcataccgaaaaatcaagcacattgacaacgcaagctattggcac 7326296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 7326393 - 7326453
Alignment:
Q  190 ccctactcaaattattcctgatagctaccaactgaactatacttacgggacacacttatttcttca 255  Q
    |||| |||||||||| |||| ||||||||||||||     ||||||||||||||||||||||||||    
T  7326393 ccctgctcaaattatccctggtagctaccaactga-----acttacgggacacacttatttcttca 7326453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 6922703 - 6922746
Alignment:
Q  197 caaattattcctgatagctaccaactgaactatacttacgggac 240  Q
    |||||||||| || |||||||||||||||||| |||||||||||    
T  6922703 caaattattcatggtagctaccaactgaactacacttacgggac 6922746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 35130658 - 35130723
Alignment:
Q  176 ggttcgaaccccggccc-tactcaaattattcctgatagctaccaactgaactatacttacgggac 240  Q
    ||||||||||||||||| | | ||||||||  ||| |||||||||||||||||| |||||||||||    
T  35130658 ggttcgaaccccggcccctgcacaaattatctctggtagctaccaactgaactacacttacgggac 35130723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 13538317 - 13538367
Alignment:
Q  190 ccctactcaaattattcctgatagctaccaactgaactatacttacgggac 240  Q
    |||||| ||||||||  |||||||||||||||||| ||| |||||||||||    
T  13538317 ccctacacaaattatctctgatagctaccaactgagctacacttacgggac 13538367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 49479494 - 49479453
Alignment:
Q  198 aaattattcctgatagctaccaactgaactatacttacggga 239  Q
    |||||||| |||||||||||||||||||||| ||||| ||||    
T  49479494 aaattatttctgatagctaccaactgaactacacttatggga 49479453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 17882291 - 17882355
Alignment:
Q  176 ggttcgaaccccggccctactcaaattattcctgatagctaccaactgaactatacttacgggac 240  Q
    ||||||||||| | |||| | |||||||| | ||| |||||| |||||||||| |||||||||||    
T  17882291 ggttcgaaccctgcccctgcacaaattatccatgaaagctactaactgaactacacttacgggac 17882355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 35010431 - 35010495
Alignment:
Q  177 gttcgaaccccggc-cctactcaaattattcctgatagctaccaactgaactatacttacgggac 240  Q
    |||||||||||| | ||| | ||||||||  |||||||||||||||||| ||| |||||||||||    
T  35010431 gttcgaaccccgactcctgcacaaattatctctgatagctaccaactgagctaaacttacgggac 35010495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 35896 - 35852
Alignment:
Q  197 caaattattcctgatagctaccaactgaactatacttacgggaca 241  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||    
T  35896 caaattatctctgatagctaccaactgaactatacttacgagaca 35852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 30746010 - 30746074
Alignment:
Q  176 ggttcgaaccccggccctactcaaattattcctgatagctaccaactgaactatacttacgggac 240  Q
    ||||| ||||||| |||| | ||||||||||||||||| ||||||||||  |||||||| |||||    
T  30746010 ggttcaaaccccgcccctgcacaaattattcctgatagttaccaactgagttatacttatgggac 30746074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 9667293 - 9667343
Alignment:
Q  190 ccctactcaaattattcctgatagctaccaactgaactatacttacgggac 240  Q
    |||||| ||||||||  |||||||||||||||||| ||| |||||||||||    
T  9667293 ccctacacaaattatctctgatagctaccaactgagctacacttacgggac 9667343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 24793513 - 24793469
Alignment:
Q  197 caaattattcctgatagctaccaactgaactatacttacgggaca 241  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||    
T  24793513 caaattatctctgatagctaccaactgaactatacttacgagaca 24793469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 29097928 - 29097888
Alignment:
Q  197 caaattattcctgatagctaccaactgaactatacttacgg 237  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  29097928 caaattattcctgatagttaccaactgaactacacttacgg 29097888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 242
Target Start/End: Complemental strand, 32594625 - 32594558
Alignment:
Q  176 ggttcgaaccccggcc-ctactcaaattattcctgatagctaccaactgaactatacttacgggacac 242  Q
    ||||||||||||| || |||| ||||||||||||  || ||||||||||||||| |||||||| ||||    
T  32594625 ggttcgaaccccgaccactacacaaattattcctattaactaccaactgaactacacttacggaacac 32594558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 52093637 - 52093594
Alignment:
Q  197 caaattattcctgatagctaccaactgaactatacttacgggac 240  Q
    |||||||| ||||||||||||||||||| | |||||||||||||    
T  52093637 caaattatccctgatagctaccaactgagccatacttacgggac 52093594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 52093792 - 52093749
Alignment:
Q  197 caaattattcctgatagctaccaactgaactatacttacgggac 240  Q
    |||||||| ||||||||||||||||||| | |||||||||||||    
T  52093792 caaattatccctgatagctaccaactgagccatacttacgggac 52093749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 2276308 - 2276274
Alignment:
Q  207 ctgatagctaccaactgaactatacttacgggaca 241  Q
    |||||||||||||||||||||||||||||| ||||    
T  2276308 ctgatagctaccaactgaactatacttacgagaca 2276274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University