View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7849_low_3 (Length: 443)
Name: NF7849_low_3
Description: NF7849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7849_low_3 |
 | |
|
| [»] chr5 (5 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 6 - 443
Target Start/End: Complemental strand, 32248901 - 32248473
Alignment:
| Q |
6 |
gatggacatcatgttcaactttgcaaaatttagagtgcatggacattagaagaaaaacttgatatcctaatcctaattagattaacaccccaaattcact |
105 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||| |
|
|
| T |
32248901 |
gatggaaatcatgttcaactttgcaaaatttagagtgcatggacattagaagaaaaacttgatatcttaatcctaatta-attaacacccaaaattcact |
32248803 |
T |
|
| Q |
106 |
actataatttgcaacaaactaacaaatttattgatagataaagaaatacaataaacatcttggggggactagaccaaaacccaagaagtaggataaatcc |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
32248802 |
actataatttgcaacaaactaacaaatttattgatagataattaaatacaataaacatcttgggag-actagaccaaaacccaagaagtaggataaatcc |
32248704 |
T |
|
| Q |
206 |
tcacgaaggaaaagagtgcaattcaataacaaaactagcaacaacaagaccaaactcaaaagagttgaa---ttctataactttgtaaagaagtcatctt |
302 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
32248703 |
tcacgaaggaatagagtgcaattcaataacaaaactagcaacaacaagaccaaactcaaaagagttcaatatttctataactttgtaaagaagtcatct- |
32248605 |
T |
|
| Q |
303 |
tgatacaccttgatagtaatacaaattgaatttcaacatttaattcagatgaggagaaggaagagctggaacatagttgtccttatagagaagagggtgg |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32248604 |
---------ttgatagtaatacaaattgaatttcaacatttaattcagatgaggagaaggaagagctggaacatagttgtccttatagagaagagggtgg |
32248514 |
T |
|
| Q |
403 |
aaatttccatcccatgaggtaggaggagatggaatgttgtc |
443 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32248513 |
aaatttccatcccatgaggtagaaggagatggaatgttgtc |
32248473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 238 - 443
Target Start/End: Complemental strand, 32236474 - 32236279
Alignment:
| Q |
238 |
aactagcaacaacaagaccaaactcaaaagagttgaattctataactttgtaaagaagtcatctttgatacaccttgatagtaatacaaattgaatttca |
337 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32236474 |
aactagcaacaacaagaccaaactcaaatgagttcaattctataactttctaaagaagtcatctttgata----------gtaatacaaattgaatttca |
32236385 |
T |
|
| Q |
338 |
acatttaattcagatgaggagaaggaagagctggaacatagttgtccttatagagaagagggtggaaatttccatcccatgaggtaggaggagatggaat |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
32236384 |
acatttaattcagatgaggagaaggaagagctggaacatagttgtccttatagagaagagggtggaaatttccatcccatgaggtagaaggagatggaat |
32236285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 13 - 400
Target Start/End: Complemental strand, 32255158 - 32254771
Alignment:
| Q |
13 |
atcatgttcaactttgcaaaatttagagtgcatggacattagaagaaaaacttgatatcctaatcctaattagattaacaccccaaattcactac-tata |
111 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||||| |||| |||||||| || || |||||| ||||||||||| ||| |
|
|
| T |
32255158 |
atcatgttcaactttgcaaatattagagtgcatggacatcagaagaaaaagttgacatcctaat------taagttgacacccaaaattcactacctatc |
32255065 |
T |
|
| Q |
112 |
atttgcaacaaactaacaaatttattgatagataaagaaatacaataaacatcttggggggactagaccaaaacccaagaagtaggataaatcctcacga |
211 |
Q |
| |
|
|||||||||| |||||||||||||||| | ||||||||||||||||| ||||||| || ||||||||||||||||||||||||||| |||| || |
|
|
| T |
32255064 |
atttgcaacaccctaacaaatttattgaca--taaagaaatacaataaaaatcttggaagggatagaccaaaacccaagaagtaggataaccgctcatga |
32254967 |
T |
|
| Q |
212 |
aggaaaagagtgcaattcaataacaaaactagcaacaacaagaccaaactcaaaagag---------------ttgaattctataactttgtaaagaagt |
296 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||| |||||||||||||| | | || ||||||||||| ||||||||| |
|
|
| T |
32254966 |
agaaaaagagtgcaattcaataac-----tagcaacaa---gaccaaactcaaaataaaacaactaaccatcatctaaatctataactttctaaagaagt |
32254875 |
T |
|
| Q |
297 |
catctttgatacaccttgatagtaatacaaattgaatttcaacatttaattcagatgaggagaaggaagagctggaacatagttgtccttatagagaaga |
396 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32254874 |
tttctttgatacaccttgatattaatacagtttgaatttcaacatttaattaggatgaggagaaggaagagctggaacatagctgtccttatagagaagg |
32254775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 50 - 185
Target Start/End: Complemental strand, 32236620 - 32236485
Alignment:
| Q |
50 |
attagaagaaaaacttgatatcctaatcctaattagattaacaccccaaattcactactataatttgcaacaaactaacaaatttattgatagataaaga |
149 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32236620 |
attagaagaaaaacttgatatcataatcctaattagattaacacccaaaattcactactataatttgcaacaaactaacaaatttattgatagagaaaga |
32236521 |
T |
|
| Q |
150 |
aatacaataaacatcttggggggactagaccaaaac |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
32236520 |
tatacaataaacatcttggggggactagaccaaaac |
32236485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 378 - 443
Target Start/End: Complemental strand, 32254733 - 32254665
Alignment:
| Q |
378 |
gttgtccttatagagaagagggtggaaatttccatcccatgaggtaggagga---gatggaatgttgtc |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||| |
|
|
| T |
32254733 |
gttgtccttatagagaagagggtggaaatttccatcccatgtaggaggaggaggggatggaatgttgtc |
32254665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 328 - 430
Target Start/End: Complemental strand, 23194009 - 23193907
Alignment:
| Q |
328 |
ttgaatttcaacatttaattcagatgaggagaaggaagagctggaacatagttgtccttatagagaagagggtggaaatttccatcccatgaggtaggag |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||| ||||| ||| |
|
|
| T |
23194009 |
ttgaatttcaacatttaattcagatgaggagaaggaagagctggagcatagttttccttatagagaagaggttggaaatttccatcccataaggtatgag |
23193910 |
T |
|
| Q |
428 |
gag |
430 |
Q |
| |
|
||| |
|
|
| T |
23193909 |
gag |
23193907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 14 - 156
Target Start/End: Complemental strand, 23203089 - 23202952
Alignment:
| Q |
14 |
tcatgttcaactttgcaaaatttagagtgcatggacattagaagaaaaacttgatatcctaatcctaattagattaacaccccaaattcactac-tataa |
112 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||| || | ||||| ||||||| ||| || | | || ||||||| ||| ||| | |
|
|
| T |
23203089 |
tcatgttcaactttgcaaaaattagagtgcatgggcattagatgatgagcttgacatcctaac------taggttgagatcctaaattcattacctatca |
23202996 |
T |
|
| Q |
113 |
tttgcaacaaactaacaaatttattgatagataaagaaatacaa |
156 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
23202995 |
tttgcaacatcctaacaaatttattgataaataaagaaatacaa |
23202952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 420
Target Start/End: Original strand, 37027682 - 37027724
Alignment:
| Q |
378 |
gttgtccttatagagaagagggtggaaatttccatcccatgag |
420 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
37027682 |
gttgtccctatagagaagagggtgaaaatttccatcccatgag |
37027724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University