View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7849_low_6 (Length: 388)
Name: NF7849_low_6
Description: NF7849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7849_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 4952033 - 4951672
Alignment:
| Q |
1 |
acaaactaaaccatgtgtctgagtcccatgacaaagttgttcaagagaatacacgtcttaaagaagaaacttttgatcttcgtcaaatggtagctgacat |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4952033 |
acaaactaaaccatgtgtctgagtcacatgacacagttgttcaagagaatgcacgacttaaagaagaaacttttgatcttcgtcaaatggtagctgacat |
4951934 |
T |
|
| Q |
101 |
gcaaattggtaactcttttccttgcaacatggaagatttatgtgaaattccatgcaacacatctcaacataaagatgattcctctaaaattcatgattga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4951933 |
gcaaattggtaactcttttccttgcaacatggaagatttatgtgaaattccatgcaacacatctcaacacaaagatgattcctctaaaattcatgattga |
4951834 |
T |
|
| Q |
201 |
gaatgagatgagactattttccagtttccattataaagatataaattactctatgttccttctttttaattttctatgatccatccacctgctatatttt |
300 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4951833 |
gaatgagatgagactattttctagtttccattataaagatataaattactctatgttccttctttttaactttctatgatccatccacctgctatatttt |
4951734 |
T |
|
| Q |
301 |
acttgtccatattcattggacaagtatgagttttagaagcttatatatgaaataaaagcttta |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
4951733 |
acttgtccatattcattggacaagtatgagttttagaagcatatatat-aaataaaagcttta |
4951672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 3 - 374
Target Start/End: Original strand, 10483641 - 10483980
Alignment:
| Q |
3 |
aaactaaaccatgtgtctgagtcccatgacaaagttgttcaagagaatacacgtcttaaagaagaaacttttgatcttcgtcaaatggtagctgacatgc |
102 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| || | ||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10483641 |
aaactaaaccatgtgtctgagtcacatgacaaagttgttcaagagaatgcaagacttaaggaagaaacttttgatcttcgccaaatggtagctgacatgc |
10483740 |
T |
|
| Q |
103 |
aaattggtaactcttttccttgcaacatggaagatttatgtgaaattccatgcaacacatctcaacataaa---gatgattcctctaaaattcatgattg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
10483741 |
aaattggtaactcttttccttgcaacatggaagatttatgtgaaattccatgcaacacatctcaacacaaagatgatgattcctctaaaattcatgat-- |
10483838 |
T |
|
| Q |
200 |
agaatgagatgagactattttccagtttccattataaagatataaattactctatgttccttctttttaattttctatgatccatccacctgctatattt |
299 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||| | ||||| |||||||| |||||||||||||||| || |
|
|
| T |
10483839 |
----tgagatgacactattttcatgtttccattataa--------------cgatgttgcttcttttaaattttctatgatcca--------------tt |
10483906 |
T |
|
| Q |
300 |
tacttgtccatattca-ttggacaagtatgagttttagaagcttatatatgaaataaaagctttagatgttgatgt |
374 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||| |
|
|
| T |
10483907 |
tacttgtcc--attcatttggacaagtatgagttttagaagcataaatatgaaataaaagctttagatattgatgt |
10483980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University