View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7849_low_9 (Length: 317)
Name: NF7849_low_9
Description: NF7849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7849_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 14 - 300
Target Start/End: Original strand, 50525234 - 50525523
Alignment:
| Q |
14 |
gtcccaagattcttagaagcttatacttttttatacctttcnnnnnnnnnnnntcttaatttctctatcaatattttgtccttattattat--------- |
104 |
Q |
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| T |
50525234 |
gtcccaagattcttagaagcttatacttttttatacctttcaaaaaaaaaaa-tcttaatttctctatcaatattttgtccttattattatcattattat |
50525332 |
T |
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| Q |
105 |
tatacggcagcacatttgaaaaggccttagtggaccaaataattgtcaccacataaactaaaccaaaattttgttgagatttttcttggtagggttcatg |
204 |
Q |
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||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
50525333 |
tatacggcaacacagttgaaaaggccttagtggaccaaataattgtcaccacataaa-----ccaaaattttgttgagatttttcttggtagggttcatg |
50525427 |
T |
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| Q |
205 |
catctcaaaacacaatcgtcaaccaaaaattcaaaagtacaggtgtggttgaccttggccaatttattaatattgattgaggtccaatcctactct |
300 |
Q |
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| T |
50525428 |
catctcaaaacacaatcgtcaaccaaaaattcaaaagtataggtgtggttgaccttggccaatttattaatattgattgaggtccaatcctactct |
50525523 |
T |
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