View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_high_16 (Length: 340)

Name: NF7850A_high_16
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_high_16
NF7850A_high_16
[»] chr7 (3 HSPs)
chr7 (10-340)||(21205553-21205883)
chr7 (19-340)||(21853789-21854113)
chr7 (19-340)||(21183088-21183409)
[»] chr2 (1 HSPs)
chr2 (58-209)||(14156108-14156259)


Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 10 - 340
Target Start/End: Original strand, 21205553 - 21205883
Alignment:
Q  10 aagaatatcgataaacactttttcttcacagtaggcattggtactaacccttgtcaaagcaaccaaacttgtcagggactcaatggagcaatgtttgtgg 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  21205553 aagaaaatcgataaacactttttcttcacagtaggcattggtactaacccttgtcaaagcaaccaaacttgtcagggactcaatggaacaatgtttgtgg 21205652  T
Q  110 catcagtgaacaatgtatctttcacaatgccaactacagcacttcttcaatcccatttctttggacaaaacaatggaatttacaccactgatttcccaag 209  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21205653 catcaatgaacaatgtatctttcacaatgccaactacagcacttcttcaatcccatttctttggacaaaacaatggaatttacaccactgatttcccaag 21205752  T
Q  210 taaacctttgaatccattcaactataccggcacgccaccgaataacactatggtgagtaatggaacaaaggttgttgttcttccttttaacacaagtgtg 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21205753 taaacctttgaatccattcaactataccggcacgccaccgaataacactatggtgagtaatggaacaaaggttgttgttcttccttttaacacaagtgtg 21205852  T
Q  310 gaacttgtgatgcaagacactagtattcttg 340  Q
    |||||||||||||||||||||||||||||||    
T  21205853 gaacttgtgatgcaagacactagtattcttg 21205883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 340
Target Start/End: Original strand, 21853789 - 21854113
Alignment:
Q  19 gataaacactttttcttcacagtaggcattggtactaacccttgtcaaagcaa---ccaaacttgtcagggactcaatggagcaatgtttgtggcatcag 115  Q
    ||||| ||||||||||||||||||||  ||||||| || ||||| |||| |||   |||||| ||||| ||||  |||||| ||||||||| |||||| |    
T  21853789 gataagcactttttcttcacagtaggtcttggtacaaatccttgccaaaacaagaaccaaacatgtcaaggacctaatggaacaatgtttgcggcatcgg 21853888  T
Q  116 tgaacaatgtatctttcacaatgccaactacagcacttcttcaatcccatttctttggacaaaacaatggaatttacaccactgatttcccaagtaaacc 215  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21853889 tgaacaatgtttctttcataatgccaaccacagcacttcttcagacacatttctttggacaaaacaatggaatttacaccactgatttcccaagtaaacc 21853988  T
Q  216 tttgaatccattcaactataccggcacgccaccgaataacactatggtgagtaatggaacaaaggttgttgttcttccttttaacacaagtgtggaactt 315  Q
    | ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||    
T  21853989 tatgaatccattcaactataccggcacaccgccgaataacactatggtgagtaatggaacaaaggttgtggttcttccttttaacactagtgtggagctt 21854088  T
Q  316 gtgatgcaagacactagtattcttg 340  Q
    ||| |||||||||||||||||||||    
T  21854089 gtgttgcaagacactagtattcttg 21854113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 19 - 340
Target Start/End: Original strand, 21183088 - 21183409
Alignment:
Q  19 gataaacactttttcttcacagtaggcattggtactaacccttgtcaaagcaaccaaacttgtcagggactcaatggagcaatgtttgtggcatcagtga 118  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||| ||||||| |||||||||  ||||||||||    
T  21183088 gataaacactttttcttcacagtaggccttggtacgaacccttgtcaaagcaaccaaacatgtcagggacccaatggaacaatgtttgcagcatcagtga 21183187  T
Q  119 acaatgtatctttcacaatgccaactacagcacttcttcaatcccatttctttggacaaaacaatggaatttacaccactgatttcccaagtaaaccttt 218  Q
    ||||||||||||||||||||||||| || ||||||||||||||||| |||  |||||||  ||  ||  | ||| || || |||| ||||| |  || ||    
T  21183188 acaatgtatctttcacaatgccaaccactgcacttcttcaatcccacttcactggacaatccagaggggtctacgccccttattttccaagcagtccctt 21183287  T
Q  219 gaatccattcaactataccggcacgccaccgaataacactatggtgagtaatggaacaaaggttgttgttcttccttttaacacaagtgtggaacttgtg 318  Q
    | |||||||||| || || ||||| ||||| || ||||| |||||||| || ||||||||||||   ||||||||||| |||||||||||||| ||||||    
T  21183288 gcatccattcaattacactggcaccccaccaaacaacaccatggtgagcaacggaacaaaggttacggttcttcctttcaacacaagtgtggagcttgtg 21183387  T
Q  319 atgcaagacactagtattcttg 340  Q
    |||||||||||||| |||||||    
T  21183388 atgcaagacactagcattcttg 21183409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 209
Target Start/End: Complemental strand, 14156259 - 14156108
Alignment:
Q  58 ccttgtcaaagcaaccaaacttgtcagggactcaatggagcaatgtttgtggcatcagtgaacaatgtatctttcacaatgccaactacagcacttcttc 157  Q
    |||||||| | ||||||||||| ||||| || || |||| ||||| |||  |||||||| ||||||||||| ||| || |  |||  ||| |||||||||    
T  14156259 ccttgtcagaacaaccaaacttctcaggaacccagtggaacaatgattgcagcatcagtaaacaatgtatcattctcactctcaaacacaacacttcttc 14156160  T
Q  158 aatcccatttctttggacaaaacaatggaatttacaccactgatttcccaag 209  Q
    |||| |||||||||||||||   |||||| |||||||  |||||||||||||    
T  14156159 aatctcatttctttggacaatctaatggagtttacactcctgatttcccaag 14156108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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