View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_high_2 (Length: 723)
Name: NF7850A_high_2
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 308 - 713
Target Start/End: Original strand, 40289580 - 40289987
Alignment:
| Q |
308 |
ctaggttatggttaacttacctctcggccaaactccatattactaaggtccgctttcttgaaaactagagttaagacnnnnnnnnnnttagctgtaacaa |
407 |
Q |
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| T |
40289580 |
ctaggttatggttaacttacctctcggccaaactccatattactaaggtccgctttcttgaaaactagagttaagacaaaaaaaacattagctctaacaa |
40289679 |
T |
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| Q |
408 |
cttagcagtgtagaaagtacaacttagtactctcttgttagataaagactcgtcnnnnnnnctattgtctaga--aaggtgaagaaggtacctagcatta |
505 |
Q |
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| T |
40289680 |
cttagcagtgtataaagtacaacttagtactctcttgttagataaagactcgtcaaaaaaactattgtctagagaaaggtgaagaaggtacctagcatta |
40289779 |
T |
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| Q |
506 |
gcaaagacttgaaagaatgtagaatgcattaatttgaattgtgtttgattatctttacttttttgtaaggaaagaggacaactaataataagtttttctg |
605 |
Q |
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| T |
40289780 |
gcaaagacttgaaagaatgtagaatgcattaatttgaattgtgtttgattatctttacttttttgtaaggaaagaggacaactaataataagtttttctg |
40289879 |
T |
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| Q |
606 |
tttgttttttgtgtacatacacgttacatattctgttgcattcaaaatttcacgcttcttgtattatgcaattttaagttgcattctattttgtatatat |
705 |
Q |
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| T |
40289880 |
tttgttttttgtgtacatacacgttacatcttctgttgcattcaaaatttcacgcttcttgtattttgcaattttaagttgcattctattttgtatatat |
40289979 |
T |
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| Q |
706 |
cttttacc |
713 |
Q |
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| T |
40289980 |
cttttacc |
40289987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 9 - 310
Target Start/End: Original strand, 40289125 - 40289420
Alignment:
| Q |
9 |
tggtgttcatgtctgtatcggtgcatcatagtaaattagtagtttaagattttgtannnnnnnnnnnnaaatttgatcaaaatttcatatgatgtgcagg |
108 |
Q |
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| T |
40289125 |
tggtgttcatgtctgtatcggtgcttcatagtaaattagtagtttaagattttgtacccccc------aaatttgatcaaaatttcatatgatgtgcagg |
40289218 |
T |
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| Q |
109 |
ttgtataaaggacttgttcctctttggggccgtcagataccatgtaagtctcttaagtcatgtccacagttttatatttggatgtaacaaactgattata |
208 |
Q |
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| T |
40289219 |
ttgtataaaggacttgttcctctttggggccgtcagataccatgtaagtctcttaagtcatgtccacagttttatatttggatgtaacaaactgattata |
40289318 |
T |
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| Q |
209 |
agttaactaagtggttggacacaagtggctatttaatgaactccagttaaggtcgaattgatcgactgtacttgtatttgaaccatggctggaacaatcc |
308 |
Q |
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| T |
40289319 |
agttaactaagtggttggacacaagtggctatttaatgaactccagttaaggtcgaattgatcgactgtacttgaatttgaaccatggctggaacaatcc |
40289418 |
T |
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