View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7850A_high_23 (Length: 306)
Name: NF7850A_high_23
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_high_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 170; Significance: 3e-91; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 116 - 297
Target Start/End: Original strand, 15265482 - 15265663
Alignment:
| Q |
116 |
ataaggcttagtttttggacaagcaccagccttatcccaagcaccttcaaaatgatgtggcgtaaatgttgtaacaattacattaatttcattaccttta |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15265482 |
ataaggcttagtttttggacaagcaccagccttatcccaagcaccttcaaaatgatgtggcgtaaatgttgtaacaattacattaatttcattaccttta |
15265581 |
T |
|
| Q |
216 |
tttcctcttctatcaattatgctactaagggtagtccttaaagcctttcttaatatatcataaaaccctatttcagtataat |
297 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
15265582 |
tttcctcttctatcaattatgctattaagggtagtccttaaagcctttcttaatacatcataaaaccctatttcagtgtaat |
15265663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 116 - 294
Target Start/End: Original strand, 15256957 - 15257135
Alignment:
| Q |
116 |
ataaggcttagtttttggacaagcaccagccttatcccaagcaccttcaaaatgatgtggcgtaaatgttgtaacaattacattaatttcattaccttta |
215 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||| |||||||||||||| ||| | |||||||||||| | ||||| ||||| | |||||||| |
|
|
| T |
15256957 |
ataaggcttagtctttggacaagcaccagctttatcccattcaccttcaaaatgagctggtgaaaatgttgtaactagtacatcaattttactaccttta |
15257056 |
T |
|
| Q |
216 |
tttcctcttctatcaattatgctactaagggtagtccttaaagcctttcttaatatatcataaaaccctatttcagtat |
294 |
Q |
| |
|
|||||||| ||||||||||| ||| |||| ||||| |||||||||||||| |||| |||||||||||| |||||||||| |
|
|
| T |
15257057 |
tttcctctcctatcaattatactattaagagtagttcttaaagcctttctcaatacatcataaaacccaatttcagtat |
15257135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 269
Target Start/End: Original strand, 15287628 - 15287781
Alignment:
| Q |
116 |
ataaggcttagtttttggacaagcaccagccttatcccaagcaccttcaaaatgatgtggcgtaaatgttgtaacaattacattaatttcattaccttta |
215 |
Q |
| |
|
|||||||||||| |||| ||||| |||||||||||||||| |||||||||||||| || | ||||||| ||||||| |||| ||| ||| |||||| |
|
|
| T |
15287628 |
ataaggcttagtctttgaacaagtaccagccttatcccaatcaccttcaaaatgagcaggtgaaaatgttttaacaatcacatctattctatttccttta |
15287727 |
T |
|
| Q |
216 |
tttcctcttctatcaattatgctactaagggtagtccttaaagcctttcttaat |
269 |
Q |
| |
|
|| | || |||||||| ||| ||||||||||||| ||||||||||||||| |
|
|
| T |
15287728 |
gcaactttcctctcaattatactattaagggtagtcctcaaagcctttcttaat |
15287781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 15265372 - 15265417
Alignment:
| Q |
6 |
aatcttaaccttccaaattcattgcctttggctttagcagccacca |
51 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15265372 |
aatcttaaccttccaaattcattgcctttggctttagcagccacca |
15265417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 265
Target Start/End: Complemental strand, 15284178 - 15284141
Alignment:
| Q |
228 |
tcaattatgctactaagggtagtccttaaagcctttct |
265 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15284178 |
tcaattatgctattaagggtagtccttaaagcctttct |
15284141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 265
Target Start/End: Original strand, 44248382 - 44248419
Alignment:
| Q |
228 |
tcaattatgctactaagggtagtccttaaagcctttct |
265 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44248382 |
tcaattatgctattaagggtagtccttaaagcctttct |
44248419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University