View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_high_33 (Length: 244)
Name: NF7850A_high_33
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 48623184 - 48623410
Alignment:
| Q |
1 |
gaaagagtatatactcgtaaaagaagatatatgcttatttgaagaaggatctcctgcggtccgttttggatttagtatatgatgaatatgtgacaggttt |
100 |
Q |
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| T |
48623184 |
gaaagagtatatactcgtaaaagaagatatatgcttatttgaagaaggatctcctgcggtccgttttggatttagtatatgatgaatatgtgacaggttt |
48623283 |
T |
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| Q |
101 |
gctttattcnnnnnnnnnnnnnnnngaagtgacaggtttgctaataaattacgtcattgtccatttgctgttagaaagacgaagaattaacatannnnnn |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48623284 |
gctttattcaaaaaaaaaaaa-----aagtgacaggtttgctaataaattacgtcattgtccatttgctgttagaaagacgaagaattaacatatttttt |
48623378 |
T |
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| Q |
201 |
ngacagagaaaggcaatgaaattaatcatatt |
232 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
48623379 |
tgacagagaaaggcaatgaaattaatcatatt |
48623410 |
T |
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