View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7850A_high_41 (Length: 221)
Name: NF7850A_high_41
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_high_41 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 117; Significance: 9e-60; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 99 - 219
Target Start/End: Original strand, 26950316 - 26950436
Alignment:
| Q |
99 |
atgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggactcaa |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26950316 |
atgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattaccttgttggactcaa |
26950415 |
T |
|
| Q |
199 |
atctcgaatatcagaagtgaa |
219 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
26950416 |
atctcgaatatcagaagtgaa |
26950436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 99 - 221
Target Start/End: Original strand, 26636219 - 26636341
Alignment:
| Q |
99 |
atgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggactcaa |
198 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26636219 |
atgaatatgaacgtgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattaccttgttggactcaa |
26636318 |
T |
|
| Q |
199 |
atctcgaatatcagaagtgaact |
221 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
26636319 |
atctcgaatatcagaagtgaact |
26636341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 99 - 221
Target Start/End: Original strand, 26742185 - 26742307
Alignment:
| Q |
99 |
atgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggactcaa |
198 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26742185 |
atgaatatgaacgtgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattaccttgttggactcaa |
26742284 |
T |
|
| Q |
199 |
atctcgaatatcagaagtgaact |
221 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
26742285 |
atctcgaatatcagaagtgaact |
26742307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 99 - 221
Target Start/End: Original strand, 26975524 - 26975646
Alignment:
| Q |
99 |
atgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggactcaa |
198 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
26975524 |
atgaatatgaacgtgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctttacatgttgctgattaccttgttggactcaa |
26975623 |
T |
|
| Q |
199 |
atctcgaatatcagaagtgaact |
221 |
Q |
| |
|
||||||||||| | ||||||||| |
|
|
| T |
26975624 |
atctcgaatattaaaagtgaact |
26975646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 99 - 219
Target Start/End: Original strand, 26959699 - 26959819
Alignment:
| Q |
99 |
atgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggactcaa |
198 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| |||||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
26959699 |
atgagtatgaacgtgattttattgaaaaaatagttacagacgtctccaacaagattaaccatgttcctttacatgttgctgattaccttgttggtctcaa |
26959798 |
T |
|
| Q |
199 |
atctcgaatatcagaagtgaa |
219 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
26959799 |
atctcgaatatcaaaagtgaa |
26959819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 99 - 207
Target Start/End: Original strand, 31288878 - 31288986
Alignment:
| Q |
99 |
atgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggactcaa |
198 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| ||||| |||||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
31288878 |
atgaatatgaacgagattttattgaaaaaatagttacagatgtctccaacaagattaaccatgttcctttacatgttgctgattaccttgttggtctcaa |
31288977 |
T |
|
| Q |
199 |
atctcgaat |
207 |
Q |
| |
|
||||||||| |
|
|
| T |
31288978 |
atctcgaat |
31288986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 99 - 219
Target Start/End: Original strand, 26849285 - 26849405
Alignment:
| Q |
99 |
atgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggactcaa |
198 |
Q |
| |
|
|||||||||||| | ||||||||| |||||||||| || |||||| ||||||||||||| |||||| | ||||||||||||||||| |||||||| || |
|
|
| T |
26849285 |
atgaatatgaacaccattttattgggaaaatagttaaggatgtctccaacaagatcaaccatgttcctttgcatgttgctgattaccttgttggacttaa |
26849384 |
T |
|
| Q |
199 |
atctcgaatatcagaagtgaa |
219 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
26849385 |
atctcgaatatcagaagtgaa |
26849405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 99 - 219
Target Start/End: Original strand, 25074443 - 25074563
Alignment:
| Q |
99 |
atgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggactcaa |
198 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| ||||| ||||| |||||||| |||||||||| ||||| || |
|
|
| T |
25074443 |
atgaatatgaacgtgattttattgaaaaaatagttagagacgtctccaacaagattaaccaaattcctttacatgttactgattaccttgttggtcttcg |
25074542 |
T |
|
| Q |
199 |
atctcgaatatcagaagtgaa |
219 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
25074543 |
atctcgaatttcagaagtgaa |
25074563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 116 - 219
Target Start/End: Complemental strand, 27664797 - 27664694
Alignment:
| Q |
116 |
tttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggactcaaatctcgaatatcagaag |
215 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||| || | ||||||||||||| ||||| ||||||||| |||||||||||||||||| |
|
|
| T |
27664797 |
tttattgaagaaatagttacagacgtctccaacaagatcaaccgttgtcatttacatgttgctgagtaccttgttggactcgaatctcgaatatcagaag |
27664698 |
T |
|
| Q |
216 |
tgaa |
219 |
Q |
| |
|
|||| |
|
|
| T |
27664697 |
tgaa |
27664694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 219
Target Start/End: Complemental strand, 17992824 - 17992704
Alignment:
| Q |
99 |
atgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttggactcaa |
198 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| ||| ||||||| ||||||||||| |||||||||| |||||||| |||| ||||| |
|
|
| T |
17992824 |
atgaatatgaacgtgattttattgaaaaaatagttacagacacttccaacaagattaaccacgttccattacatgttgccgattaccttattggtctcaa |
17992725 |
T |
|
| Q |
199 |
atctcgaatatcagaagtgaa |
219 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
17992724 |
atctcgaatatcagaagtgaa |
17992704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University