View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_high_5 (Length: 602)

Name: NF7850A_high_5
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_high_5
NF7850A_high_5
[»] chr4 (3 HSPs)
chr4 (61-581)||(27731622-27732142)
chr4 (17-291)||(27738612-27738887)
chr4 (241-275)||(51220042-51220076)
[»] chr3 (2 HSPs)
chr3 (61-423)||(21249569-21249929)
chr3 (443-489)||(21249473-21249519)
[»] chr1 (7 HSPs)
chr1 (109-437)||(21155078-21155407)
chr1 (17-293)||(21160511-21160779)
chr1 (443-581)||(21155455-21155590)
chr1 (165-221)||(21074349-21074405)
chr1 (169-296)||(21078992-21079119)
chr1 (241-293)||(21074290-21074342)
chr1 (96-136)||(21074459-21074499)
[»] chr6 (2 HSPs)
chr6 (443-581)||(3073644-3073778)
chr6 (92-197)||(14809296-14809402)


Alignment Details
Target: chr4 (Bit Score: 505; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 61 - 581
Target Start/End: Original strand, 27731622 - 27732142
Alignment:
Q  61 cttgaagggtgttcatgaaataacaaatgactatactcctctattgagtttacatctgtgaacacattcagaatatcaatggaaaaacaaatcatttcct 160  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27731622 cttgaagggtgttcatgaaataacaaatgactatactcctctgttgagtttacatctgtgaacacattcagaatatcaatggaaaaacaaatcattttct 27731721  T
Q  161 ttgcatagaacaatgagttaaaatgacctaaataagacgatgaaagactaattggtttcattcatgtgccacatcctctgttggaagctcattcaaatca 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27731722 ttgcatagaacaatgagttaaaatgacctaaataagacgatgaaagactaattggtttcattcatgtgccacatcctctgttggaagctcattcaaatca 27731821  T
Q  261 aaattcataacaactccttttggcttcaattcattagaactctgttccatcccagttcctccgccttcattatttttcttcttttcttcaccttggatgc 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27731822 aaattcataacaactccttttggcttcaattcattagaactctgttccatcccagttcctccgccttcattatttttcttcttttcttcaccttggatgc 27731921  T
Q  361 attgccagaccttgttgtctttaatcttgaatatcagccacaaactctttttactgttattattattattctccttcaccttgatcttgtcattatccac 460  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27731922 attgccagaccttgttgtctttaatcttgaatatcagccgcaaactctttttactgttattattattattctccttcaccttgatcttgtcattatccac 27732021  T
Q  461 gttgcttgaaactttgaactttttatgtacctgaccatgatcaccaccaccaccagccgcagcgcaagacatattgaagagtgtttgtgctccattaaga 560  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27732022 attgcttgaaactttgaactttttatgtacctgaccatgatcaccaccaccaccagccgcagcgcaagacatattgaagagtgtttgtgctccattaaga 27732121  T
Q  561 tgttcatgatcaatgatattt 581  Q
    |||||||||||||||||||||    
T  27732122 tgttcatgatcaatgatattt 27732142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 17 - 291
Target Start/End: Original strand, 27738612 - 27738887
Alignment:
Q  17 ggacatccaactcattcaattgttttaatgga-aaagnnnnnnnncttgaagggtgttcatgaaataacaaatgactatactcctctattgagtttacat 115  Q
    |||||| ||||||||||||||| ||||||||| |||         |||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  27738612 ggacattcaactcattcaattgctttaatggagaaataaataaaacttgaagggtgttcatgaaataacaaataactatactcctctattgagtttccat 27738711  T
Q  116 ctgtgaacacattcagaatatcaatggaaaaacaaatcatttcctttgcatagaacaatgagttaaaatgacctaaataagacgatgaaagactaattgg 215  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||    
T  27738712 ctgtgaacacattcagaatatcaatggaaaaacaaatcattacatttgcatagaacaatgagttcaaatgacctaaataagacaatgaaagaccaattgg 27738811  T
Q  216 tttcattcatgtgccacatcctctgttggaagctcattcaaatcaaaattcataacaactccttttggcttcaatt 291  Q
    |||||||||||||  ||||| ||| |||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  27738812 tttcattcatgtgaaacatcttctattggaagcgcattcaaatcaaaattcataacaactcctttttgcttcaatt 27738887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 275
Target Start/End: Original strand, 51220042 - 51220076
Alignment:
Q  241 ttggaagctcattcaaatcaaaattcataacaact 275  Q
    |||||||||||||| ||||||||||||||||||||    
T  51220042 ttggaagctcattcgaatcaaaattcataacaact 51220076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 61 - 423
Target Start/End: Complemental strand, 21249929 - 21249569
Alignment:
Q  61 cttgaagggtgttcatgaaataacaaatgactatactcctctattgagtttacatctgtgaacacattcagaatatcaatggaaaaacaaatcatttcct 160  Q
    |||||| ||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  21249929 cttgaaaggtgttcatgaaataacaaataactatactcctctattaagtttacatttgtgaacacattcaggatatcaatggaaaaacaaatcatttcct 21249830  T
Q  161 ttgcatagaacaatgagttaaaatgacctaaataagacgatgaaagactaattggtttcattcatgtgccacatcctctgttggaagctcattcaaatca 260  Q
    || || |||||||| |||| ||||||||||||||| || |||||| || |||||||||||||||||||| ||||| |||||| |||||||||||||||||    
T  21249829 ttacaaagaacaattagttcaaatgacctaaataatacaatgaaaaaccaattggtttcattcatgtgcaacatcttctgtttgaagctcattcaaatca 21249730  T
Q  261 aaattcataacaactccttttggcttcaattcattagaactctgttccatcccagttcctccgccttcattatttttcttcttttcttcaccttggatgc 360  Q
    ||||||||||||||||||||| | |||||||||||| ||||||||||||||||| || | || ||||||||||||||||||||||||||| ||||| |||    
T  21249729 aaattcataacaactcctttt-gattcaattcattaaaactctgttccatcccattttcgccaccttcattatttttcttcttttcttcatcttggctgc 21249631  T
Q  361 attgccagaccttgttgtctttaatcttgaatatcagccacaaactctttttactgttattat 423  Q
    ||||||||||||||||||||||||||||| ||| ||    |||||||||||||||||||||||    
T  21249630 attgccagaccttgttgtctttaatcttggatagca-tagcaaactctttttactgttattat 21249569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 489
Target Start/End: Complemental strand, 21249519 - 21249473
Alignment:
Q  443 gatcttgtcattatccacgttgcttgaaactttgaactttttatgta 489  Q
    |||||| ||||||||||| ||||||||| |||||| |||||||||||    
T  21249519 gatcttttcattatccacattgcttgaagctttgagctttttatgta 21249473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 109 - 437
Target Start/End: Original strand, 21155078 - 21155407
Alignment:
Q  109 tttacatctgtgaacacattcagaatatcaatggaaaaacaaatcatttcctttgcatagaacaatgagttaaaatgacctaaataagacgatgaaagac 208  Q
    |||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||| ||||| |||    
T  21155078 tttacatctgtgaacatattccgaatataaatggaaaaacaaatcatttcctttgcataaaccaatgagtttaaatgacctaaataagacaatgaa-gac 21155176  T
Q  209 taattggtttcattcatgtgccacatcctctgttggaagctcattcaaatcaaaattcataacaactccttttggcttcaattcattagaactctgttcc 308  Q
     |||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21155177 caattggtttcattcatgtgcaacatcttcagttggaagctcattcaaatcaaaattcataacaactccttttggcttcaattcattagaactatgttcc 21155276  T
Q  309 atcccagtt--cctccgccttcattatttttcttcttttcttcaccttggatgcattgccagaccttgttgtctttaatcttgaatatcagccacaaact 406  Q
     |||| |||   | || ||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||| ||| | |||||||    
T  21155277 ctccctgtttcacaccaccttcgttatttttcttcttttcttcaccttggatgcattgcacgaccttgttgtctttaaccttgaatctcaacaacaaact 21155376  T
Q  407 ctttttactgttattattattattctccttc 437  Q
    |||||||| |||||||| |||||| ||||||    
T  21155377 ctttttacggttattatcattattatccttc 21155407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 17 - 293
Target Start/End: Original strand, 21160511 - 21160779
Alignment:
Q  17 ggacatccaactcattcaattgttttaatgga---aaagnnnnnnnncttgaagggtgttcatgaaataacaaatgactatactcctctattgagtttac 113  Q
    |||||||||||||||||||||| |||||||||   |||         ||||||| |||||||||||||||||||| || |||||| ||||||||||||||    
T  21160511 ggacatccaactcattcaattgctttaatggagaaaaataaataaaacttgaagagtgttcatgaaataacaaataaccatactcatctattgagtttac 21160610  T
Q  114 atctgtgaacacattcagaatatcaatggaaaaacaaatcatttcctttgcatagaacaatgagttaaaatgacctaaataagacgatgaaagactaatt 213  Q
    ||||| ||||||||||||| ||           ||||||||||||||||||||| ||||||||||| |||||||||||  ||||| ||||||||| ||||    
T  21160611 atctgcgaacacattcagacta-----------acaaatcatttcctttgcataaaacaatgagttcaaatgacctaaccaagacaatgaaagaccaatt 21160699  T
Q  214 ggtttcattcatgtgccacatcctctgttggaagctcattcaaatcaaaattcataacaactccttttggcttcaattca 293  Q
    ||||| |||||| ||  ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  21160700 ggttttattcatctgaaacatcttctgttggaaactcattcaaatcaaaattcataacaactccttttggcttcaattca 21160779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 443 - 581
Target Start/End: Original strand, 21155455 - 21155590
Alignment:
Q  443 gatcttgtcattatccacgttgcttgaaactttgaactttttatgtacctgaccatgatcaccaccaccaccagccgcagcgcaagacatattgaagagt 542  Q
    |||||||||||||||||| ||||||||| |||||| ||||| |||||  ||||||||||||||||||| | |||| |||   ||||| |||| |||||||    
T  21155455 gatcttgtcattatccacattgcttgaagctttgagcttttcatgtagatgaccatgatcaccaccacgagcagcagca---caagagatatggaagagt 21155551  T
Q  543 gtttgtgctccattaagatgttcatgatcaatgatattt 581  Q
    || |||||||||||||  |||||||||||||||||||||    
T  21155552 gtatgtgctccattaatttgttcatgatcaatgatattt 21155590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 21074405 - 21074349
Alignment:
Q  165 atagaacaatgagttaaaatgacctaaataagacgatgaaagactaattggtttcat 221  Q
    ||||||||||||||| |||| ||||||||||||  ||||||||||||||||||||||    
T  21074405 atagaacaatgagttcaaatcacctaaataagaaaatgaaagactaattggtttcat 21074349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 169 - 296
Target Start/End: Complemental strand, 21079119 - 21078992
Alignment:
Q  169 aacaatgagttaaaatgacctaaataagacgatgaaagactaattggtttcattcatgtgccacatcctctgttggaagctcattcaaatcaaaattcat 268  Q
    ||||||||||| |||| |||||||| |||  ||||||||| | |||    ||||||| ||| ||| | | |||||||||||| ||||||||||||||| |    
T  21079119 aacaatgagttcaaatcacctaaattagaaaatgaaagaccagttgaacacattcatctgcaacaccatttgttggaagctcgttcaaatcaaaattcct 21079020  T
Q  269 aacaactccttttggcttcaattcatta 296  Q
    |||||||  || || |||||||||||||    
T  21079019 aacaactttttctgacttcaattcatta 21078992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 293
Target Start/End: Complemental strand, 21074342 - 21074290
Alignment:
Q  241 ttggaagctcattcaaatcaaaattcataacaactccttttggcttcaattca 293  Q
    |||||| |||||||||||||||||||||||||||||  | || ||||||||||    
T  21074342 ttggaatctcattcaaatcaaaattcataacaactctatctgccttcaattca 21074290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 21074499 - 21074459
Alignment:
Q  96 ctcctctattgagtttacatctgtgaacacattcagaatat 136  Q
    |||||| ||||||||||||| |||||||| |||||||||||    
T  21074499 ctcctccattgagtttacatttgtgaacagattcagaatat 21074459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 443 - 581
Target Start/End: Original strand, 3073644 - 3073778
Alignment:
Q  443 gatcttgtcattatccacgttgcttgaaactttgaactttttatgtacctgaccatgatcaccaccaccaccagccgcagcgcaagacatattgaagagt 542  Q
    ||||||||||||||||||  |  ||||| ||||||||||||||||||  |||||||||||| |||||| ||     |  | ||||||||||| |||||||    
T  3073644 gatcttgtcattatccacaattgttgaagctttgaactttttatgtaggtgaccatgatcagcaccacgaca----gttgtgcaagacatatcgaagagt 3073739  T
Q  543 gtttgtgctccattaagatgttcatgatcaatgatattt 581  Q
    || | ||||||||||||||||||||||||||||||||||    
T  3073740 gtatatgctccattaagatgttcatgatcaatgatattt 3073778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 92 - 197
Target Start/End: Complemental strand, 14809402 - 14809296
Alignment:
Q  92 tatactcctctattgagtttacatctgtgaacacattcagaatatcaatgg-aaaaacaaatcatttcctttgcatagaacaatgagttaaaatgaccta 190  Q
    |||| |||| |||||||||||||| |||| |||||||||||||||| |||| |||||| ||||||||||||| ||||||||||||| || |||| |||||    
T  14809402 tatattcctttattgagtttacatttgtgtacacattcagaatatcgatggaaaaaaccaatcatttcctttccatagaacaatgacttcaaatcaccta 14809303  T
Q  191 aataaga 197  Q
     ||||||    
T  14809302 gataaga 14809296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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