View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_1 (Length: 745)
Name: NF7850A_low_1
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 686; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 686; E-Value: 0
Query Start/End: Original strand, 18 - 727
Target Start/End: Original strand, 24636857 - 24637566
Alignment:
| Q |
18 |
acatcagaatgatgcctgatctaagtttgacttcaccttgataaaacctatacatggtgcatcacactgaacccaagtgtggtcacaacctgagtcaatg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
24636857 |
acatcagaatgatgcctgatctaagtttgacttcaccttgataaaacctttacatggtgcatcacactgaacccaagtgtggtcacaaactgagtcaatg |
24636956 |
T |
|
| Q |
118 |
tcaacctcataaatcttgggggaatagccagtgttgagaggcactgtataatgcctgcataaagagaatcacagatcacttctttttcggggaatccata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24636957 |
tcaacctcataaatcttgggggaatagccagtgttgagaggcactgtataatgcctgcataaagagaatcacagatcacttctttttcggggaatccata |
24637056 |
T |
|
| Q |
218 |
taatttaaacatgaccaaaaaactaattttatttagaaattaaaaaatcatgtttatttttcttacaaagcttaggaatccaatttgtgaattattaaac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24637057 |
taatttaaacatgaccaaaaaactaattttatttagaaattaaaaaatcatgtttatttttcttacaaagcttaggaatccaatttgtgaatcattaaac |
24637156 |
T |
|
| Q |
318 |
cgagaaacagataaaagggaccccaaaaaatgaatcactcaattggttcaattgcgtaaaataacaacatggatccgagttactgctactataagatttg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24637157 |
tgagaaacagataaaagggaccccaaaaaatgaatcactcaattggttcaattgcgtaaaataacaacatggatccgagttactgctactataagatttg |
24637256 |
T |
|
| Q |
418 |
caaatgagtacgggaaccatttgaggattcccacaatttatgttcctgcaaaaataaatgagtaatcgagtataaaaggaacaatggaaccttgcataac |
517 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24637257 |
caaacgagtacgggaaccatttgaggattcccacaatttatgttcctgcaaaaataaatgagtaatcgagtataaaaggaacaatggaaccttgcataac |
24637356 |
T |
|
| Q |
518 |
attaaaatgaacaagggatacataaaacatataggcacaacaagattttaaggaatccaaaagtaagttaaaacagaaacacgagcagcatctatgaaaa |
617 |
Q |
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| T |
24637357 |
attaaaatgaacaagggatacataaaacatataggcacaacaagattttaaggaatccaaaagtaatttaaaacagaaacacgagcagcatctatgaaaa |
24637456 |
T |
|
| Q |
618 |
cgtgcagaagttagtggggagctataaattatgtttcagatgcctttcaatcatcaccattataagaaataacagcttgattcctccgacaaatgaaaaa |
717 |
Q |
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| T |
24637457 |
cgtgcagaagttagtggggagctataaattatgtttcagatgcctttcaatcatcaccattataagaaataacagcttgattcctccgacaaatgaaaaa |
24637556 |
T |
|
| Q |
718 |
gcaaccaaat |
727 |
Q |
| |
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|||||||||| |
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|
| T |
24637557 |
gcaaccaaat |
24637566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 24715391 - 24715669
Alignment:
| Q |
18 |
acatcagaatgatgcctgatctaagtttgacttcaccttgataaaacctatacatggtg--catcacactgaacccaagtgtggtcacaacctgagtcaa |
115 |
Q |
| |
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||||||||||||| || | ||||||||||||||| ||||||| ||||| |||| |||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
24715391 |
acatcagaatgataccaggtctaagtttgacttcgccttgatgcaacctttacaaggtgtgcatcacactgaacccaagtgctgtcacaacctgagtcaa |
24715490 |
T |
|
| Q |
116 |
tgtcaacctcataaatcttgggggaatagccagtgttgagag---gcactgtataatgcctgcataaagagaatcacagatcac----ttctttttcggg |
208 |
Q |
| |
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||||||| ||||||| ||| | || ||||||| |||||| || ||||||| ||||||||||||||||||| ||| ||||| || || ||| || |
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| T |
24715491 |
tgtcaacgtcataaagcttagaggcatagccaatgttgatagatcacactgtacaatgcctgcataaagagaaccacgtatcactttatttttcttcagg |
24715590 |
T |
|
| Q |
209 |
gaatccatataatttaaacatgacca-aaaaactaattttatttagaaattaaaaaatcatgtttatttttcttacaaa |
286 |
Q |
| |
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||||||||||||||||||| |||| | |||||||||||| |||| |||||| ||||||||||||| ||||||| ||||| |
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| T |
24715591 |
gaatccatataatttaaacttgacaataaaaactaatttcatttcgaaattgaaaaatcatgtttctttttctcacaaa |
24715669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 389 - 596
Target Start/End: Original strand, 24715794 - 24716010
Alignment:
| Q |
389 |
gatccgagttactgctactataagatttgcaaa-tgagtacgggaaccatttgagga-------------ttcccacaatttatgttcctgcaaaaataa |
474 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||| ||||||| ||||||||||||||| ||||||||| ||| ||| || |||||| || |
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| T |
24715794 |
gatccgagctaccgctactataagatttgcaaactgagtacaggaaccatttgaggacaaaatttgaggcttcccacaagttaagttactacaaaaaaaa |
24715893 |
T |
|
| Q |
475 |
atgagtaatcgagtataaaaggaacaatggaaccttgcataacattaaaatgaacaagggatacataaaacatataggcacaacaagattttaaggaatc |
574 |
Q |
| |
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| ||| ||||||||||| || ||||||||| |||||||||||||||||| |||||||||||||||||| |||||||| ||| |||||||||| | |
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| T |
24715894 |
a-----aattgagtataaaagcaataatggaaccatgcataacattaaaatgagcaagggatacataaaacaaataggcaccgcaattttttaaggaacc |
24715988 |
T |
|
| Q |
575 |
caaaagtaagttaaaacagaaa |
596 |
Q |
| |
|
||||| ||| |||||||||||| |
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| T |
24715989 |
caaaactaatttaaaacagaaa |
24716010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 643 - 727
Target Start/End: Original strand, 24716115 - 24716194
Alignment:
| Q |
643 |
aaattatgtttcagatgcctttcaatcatcaccattataagaaataacagcttgattcctccgacaaatgaaaaagcaaccaaat |
727 |
Q |
| |
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|||||||||||||||| |||||||||||| ||||| |||||||||| ||||||||||| | | |||||||||||||||||| |
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| T |
24716115 |
aaattatgtttcagattcctttcaatcat-----ttataggaaataacagattgattcctcctatatatgaaaaagcaaccaaat |
24716194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 546
Target Start/End: Original strand, 24632253 - 24632314
Alignment:
| Q |
485 |
gagtataaaaggaacaatggaaccttgcataacattaaaatgaacaagggatacataaaaca |
546 |
Q |
| |
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||||||||| |||||| ||||||| ||||||||| |||||||||| | |||||||||||| |
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| T |
24632253 |
gagtataaacggaacagcagaaccttacataacattgaaatgaacaatgcatacataaaaca |
24632314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 62 - 180
Target Start/End: Original strand, 10330707 - 10330825
Alignment:
| Q |
62 |
aacctatacatggtgcatcacactgaacccaagtgtggtcacaacctgagtcaatgtcaacctcataaatcttgggggaatagccagtgttgagaggcac |
161 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| |||||| ||||||||| || |||| ||||||| ||| || | ||||||| ||||||||| || |
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| T |
10330707 |
aacctttacatggtgcatcacactgaacccaagtgaggtcactacctgagtcgatatcaaggtcataaagctttggaggatagccaatgttgagagagac |
10330806 |
T |
|
| Q |
162 |
tgtataatgcctgcataaa |
180 |
Q |
| |
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||||||| ||| |||||| |
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|
| T |
10330807 |
agtataatacctacataaa |
10330825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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