View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_100 (Length: 356)
Name: NF7850A_low_100
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_100 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 17 - 351
Target Start/End: Original strand, 26130870 - 26131204
Alignment:
| Q |
17 |
atcagtcatatttatccgagaatgcacataatgtttgatgtggctatggagtgcctcacaacaacatgtggttcttataccagcaaagaaacttcctcta |
116 |
Q |
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| T |
26130870 |
atcagtcatatttatccgagaatgcacatattgtttgatgtggctatggagtgcctcacaacaacatgtggttcttataccagcaaagaaacttcctcta |
26130969 |
T |
|
| Q |
117 |
atgtgggcagtcgcccacatcttcttcttttcatacatttcattgatccaagtgttgtcttgtaacgcaaacttttgaaccatctcagaccacaaccctt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
26130970 |
atgtgggcagtcgcccacatcttcttcttttcatacatttcattgatccaagtgttgtcttgtaacccaaacttttgaaccatctcagaccacaactctt |
26131069 |
T |
|
| Q |
217 |
caaatttattaacctcaatgtcagccagcatgcattttttaagataaggcataaaatcgggaatcccaatcttggttgatgcattctttaacagatgcca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26131070 |
caaatttattaacctcaatgtcagccagcatgcattttttaagataaggcataaaatcgggaatcccaatcttggttgatgcattctttaacagatgcca |
26131169 |
T |
|
| Q |
317 |
agcacacaatctgtgatgggcggcagggaatattt |
351 |
Q |
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| T |
26131170 |
agcacacaatctgtgatgggctgcagggaatattt |
26131204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 331
Target Start/End: Complemental strand, 11010722 - 11010410
Alignment:
| Q |
19 |
cagtcatatttatccgagaatgcacataatgtttgatgtggctatggagtgcctcacaacaacatgtggttcttataccagcaaagaaacttcctctaat |
118 |
Q |
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| T |
11010722 |
cagtcatgtttatccgagaatgcacgtattgtcccatgtggctatggagtgcctcacaacgaaaggtggttcttatatcagcaaagaaacttcctctgat |
11010623 |
T |
|
| Q |
119 |
gtgggcagtcgcccacatcttcttcttttcatacatttcattgatccaagtgttgtcttgtaacgcaaacttttgaaccatctcagaccacaacccttca |
218 |
Q |
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|| | || ||||||||||||||||||| ||||| |||||||||||| |||||| || |||| ||||||||||||||||||||||| ||| |||| |
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| T |
11010622 |
gtaagaggtgacccacatcttcttcttttcgtacatctcattgatccaactgttgttttctaacccaaacttttgaaccatctcagacaacagattttca |
11010523 |
T |
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| Q |
219 |
aatttattaacctcaatgtcagccagcatgcattttttaagataaggcataaaatcgggaatcccaatcttggttgatgcattctttaacagatgccaag |
318 |
Q |
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| T |
11010522 |
aatttgttaatctcaatgtcacccaacatgcattttttcagataagacataaaatcaggaatcccaatgttggtggaagcattccttaacagatgccagg |
11010423 |
T |
|
| Q |
319 |
cacacaatctgtg |
331 |
Q |
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||||||| ||||| |
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| T |
11010422 |
cacacaacctgtg |
11010410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 129 - 331
Target Start/End: Original strand, 35241744 - 35241946
Alignment:
| Q |
129 |
gcccacatcttcttcttttcatacatttcattgatccaagtgttgtcttgtaacgcaaacttttgaaccatctcagaccacaacccttcaaatttattaa |
228 |
Q |
| |
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|||||||||||||||||||| ||||| |||||||||||| |||||| || |||| ||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
35241744 |
gcccacatcttcttcttttcgtacatctcattgatccaattgttgttttctaacccaaacttttgaaccatctcagaccacagatcttcaaatttgttaa |
35241843 |
T |
|
| Q |
229 |
cctcaatgtcagccagcatgcattttttaagataaggcataaaatcgggaatcccaatcttggttgatgcattctttaacagatgccaagcacacaatct |
328 |
Q |
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||||||||||| ||||||||||||||| ||||||| ||||||||| ||||||||||| ||||| | |||||| |||||||||||||||||||||| || |
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| T |
35241844 |
tctcaatgtcagtcagcatgcattttttcagataagacataaaatcaggaatcccaatgttggtgcaagcattccttaacagatgccaagcacacaacct |
35241943 |
T |
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| Q |
329 |
gtg |
331 |
Q |
| |
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||| |
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| T |
35241944 |
gtg |
35241946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 264
Target Start/End: Complemental strand, 21428363 - 21428243
Alignment:
| Q |
144 |
ttttcatacatttcattgatccaagtgttgtcttgtaacgcaaacttttgaaccatctcagaccacaacccttcaaatttattaacctcaatgtcagcca |
243 |
Q |
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||||||||||| |||||||||||| ||||||||||||| ||||||||| |||||||||| ||| ||| ||||||| | | | ||||| |||| ||| |
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| T |
21428363 |
ttttcatacatctcattgatccaactgttgtcttgtaaaccaaacttttcaaccatctcaacccataactcttcaaacgcactgatctcaaggtcaccca |
21428264 |
T |
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| Q |
244 |
gcatgcattttttaagataag |
264 |
Q |
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|||||||||||| ||||||| |
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| T |
21428263 |
acatgcattttttcagataag |
21428243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 25813948 - 25813874
Alignment:
| Q |
130 |
cccacatcttcttcttttcatacatttcattgatccaagtgttgtcttgtaacgcaaacttttgaaccatctcag |
204 |
Q |
| |
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||||||||||||| || || |||| ||||||||||||| ||||||||| ||| ||||| | |||||||| |||| |
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| T |
25813948 |
cccacatcttctttttctcgtacaattcattgatccaattgttgtcttctaaaccaaacctctgaaccatttcag |
25813874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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