View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_103 (Length: 354)

Name: NF7850A_low_103
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_103
NF7850A_low_103
[»] chr2 (1 HSPs)
chr2 (18-353)||(17922354-17922689)
[»] chr6 (12 HSPs)
chr6 (18-350)||(12949536-12949870)
chr6 (22-168)||(12900658-12900804)
chr6 (164-344)||(12908113-12908295)
chr6 (164-344)||(12933202-12933384)
chr6 (22-141)||(12959203-12959322)
chr6 (250-350)||(12958995-12959096)
chr6 (250-350)||(18556001-18556102)
chr6 (39-154)||(18556194-18556309)
chr6 (18-112)||(12908327-12908426)
chr6 (18-112)||(12933406-12933505)
chr6 (243-303)||(12900486-12900546)
chr6 (164-218)||(12900553-12900607)
[»] chr5 (4 HSPs)
chr5 (17-140)||(10613358-10613483)
chr5 (108-171)||(10605861-10605924)
chr5 (296-350)||(10612645-10612699)
chr5 (109-161)||(10761839-10761891)


Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 353
Target Start/End: Original strand, 17922354 - 17922689
Alignment:
Q  18 attttaataaagatttgattaaatcgacacccattgaattaactataatgacaattcagatgagaatgacgataaatatgggagaattatcaattctcac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17922354 attttaataaagatttgattaaatcgacacccattgaattaactataatgacaattcagatgagaataacgataaatatgggagaattatcaattctcac 17922453  T
Q  118 atcatttaattagaaagcaatacagaaaacattgtttatttatagcaactagtatactaagcattgccacttgtgattccagctgaccattcattttctt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17922454 atcatttaattagaaagcaatacagaaaacattgtttatttatagcaactagtatactaagcattgccacatgtgattccagctgaccattcattttctt 17922553  T
Q  218 agcaaagtacattatgctgcataacttctctttccacaaatgatttagaaattttgttcaagacctgaaattaacatcaagaaggttattattacaatta 317  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  17922554 agcaaagtacattatgctgcataacttctctttccacaaatgacttagaaattttgttcaagacctgaaattaaaatcaagaaggttattattaccatta 17922653  T
Q  318 tattttgtagtttgggaattttgaaatgcacaacaa 353  Q
    ||||||||||||||||||||||||||||||||||||    
T  17922654 tattttgtagtttgggaattttgaaatgcacaacaa 17922689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 12949870 - 12949536
Alignment:
Q  18 attttaataaagatttgattaaatcgacacccattgaattaactataatgacaattcagatgagaatgacgataaatatgggagaattatcaattctcac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  12949870 attttaataaagatttgattaaatcgacacccattgaattaactacaatgacaattcatatgagaatgaagataaatatgggagaattatcaattctcac 12949771  T
Q  118 atca--tttaattagaaagcaatacagaaaacattgtttatttatagcaactagtatactaagcattgccacttgtgattccagctgaccattcattttc 215  Q
    ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12949770 atcacatttaattagaaagcaatacagaaaacattgtttatttatagcaactagtatactaagcattgccacatgtgattccagctgaccattcattttc 12949671  T
Q  216 ttagcaaagtacattatgctgcataacttctctttccacaaatgatttagaaattttgttcaagacctgaaattaacatcaagaaggttattattacaat 315  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||| ||    
T  12949670 ttagcagagtacattatgctgcataacttctctttccacaaatgacttagaaattttgttcaagacctgaaattaaaatcaagaaggtcattattaccat 12949571  T
Q  316 tatattttgtagtttgggaattttgaaatgcacaa 350  Q
    ||||||||||||| | |||||||||||||||||||    
T  12949570 tatattttgtagtctaggaattttgaaatgcacaa 12949536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 22 - 168
Target Start/End: Complemental strand, 12900804 - 12900658
Alignment:
Q  22 taataaagatttgattaaatcgacacccattgaattaactataatgacaattcagatgagaatgacgataaatatgggagaattatcaattctcacatca 121  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||    
T  12900804 taataaagatttgattaaatcgacacccattgaattaactacaatgacaattcatatgagaatgaagataaatatgggagaattatcaattctcacttca 12900705  T
Q  122 tttaattagaaagcaatacagaaaacattgtttatttatagcaacta 168  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||    
T  12900704 tttaattagaaagcaatacagaaaacattctttatttataacaacta 12900658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 164 - 344
Target Start/End: Complemental strand, 12908295 - 12908113
Alignment:
Q  164 aactagtatactaagcattgccacttgtgattccagctgaccattcattttcttagc-aaagtacattatgctgcataacttctctttccacaaatgatt 262  Q
    |||||||| || ||| || || || |||||||| |||||| |||||||||||||| | ||||||| |||||||||||| ||||||||||||||||||| |    
T  12908295 aactagtaaacaaagtatagcgacatgtgattcaagctgaacattcattttcttaaccaaagtacgttatgctgcatatcttctctttccacaaatgact 12908196  T
Q  263 tagaaattttgttcaagacc-tgaaattaacatcaagaaggttattattacaattatattttgtagtttgggaattttgaaat 344  Q
    |||||||||||||||||||| ||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  12908195 tagaaattttgttcaagaccctgaaattaaaatcaagaaggtcattattaccattatattttgtagtttgggaattttgaaat 12908113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 164 - 344
Target Start/End: Complemental strand, 12933384 - 12933202
Alignment:
Q  164 aactagtatactaagcattgccacttgtgattccagctgaccattcattttcttagc-aaagtacattatgctgcataacttctctttccacaaatgatt 262  Q
    |||||||| || ||| || || || |||||||| |||||| |||||||||||||| | ||||||| |||||||||||| ||||||||||||||||||| |    
T  12933384 aactagtaaacaaagtatagcgacatgtgattcaagctgaacattcattttcttaaccaaagtacgttatgctgcatatcttctctttccacaaatgact 12933285  T
Q  263 tagaaattttgttcaagacc-tgaaattaacatcaagaaggttattattacaattatattttgtagtttgggaattttgaaat 344  Q
    |||||||||||||||||||| ||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  12933284 tagaaattttgttcaagaccctgaaattaaaatcaagaaggtcattattaccattatattttgtagtttgggaattttgaaat 12933202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 22 - 141
Target Start/End: Complemental strand, 12959322 - 12959203
Alignment:
Q  22 taataaagatttgattaaatcgacacccattgaattaactataatgacaattcagatgagaatgacgataaatatgggagaattatcaattctcacatca 121  Q
    |||| ||||| |||||||||||||||||||||||||||||| | |||||||||  |||||||||| |||||||||||||||||||||||||||||||| |    
T  12959322 taatcaagatatgattaaatcgacacccattgaattaactacagtgacaattcttatgagaatgaagataaatatgggagaattatcaattctcacatta 12959223  T
Q  122 tttaattagaaagcaataca 141  Q
    ||||||||||||||||||||    
T  12959222 tttaattagaaagcaataca 12959203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 250 - 350
Target Start/End: Complemental strand, 12959096 - 12958995
Alignment:
Q  250 tccacaaat-gatttagaaattttgttcaagacctgaaattaacatcaagaaggttattattacaattatattttgtagtttgggaattttgaaatgcac 348  Q
    ||||||||| || ||||||||||||||||| |||||||||||| ||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||    
T  12959096 tccacaaattgacttagaaattttgttcaaaacctgaaattaaaatcaagaaggtcattattaccattatattttatagtttgggaattttgaaatgcac 12958997  T
Q  349 aa 350  Q
    ||    
T  12958996 aa 12958995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 250 - 350
Target Start/End: Complemental strand, 18556102 - 18556001
Alignment:
Q  250 tccacaaat-gatttagaaattttgttcaagacctgaaattaacatcaagaaggttattattacaattatattttgtagtttgggaattttgaaatgcac 348  Q
    ||||||||| || |||||||| |||||||| |||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  18556102 tccacaaattgacttagaaatattgttcaaaacctgaaattaaaatcaagaaggtaattattaccattatattttgtagtttgggaattttgaaatgcac 18556003  T
Q  349 aa 350  Q
    ||    
T  18556002 aa 18556001  T

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Target: chr6; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 39 - 154
Target Start/End: Complemental strand, 18556309 - 18556194
Alignment:
Q  39 aatcgacacccattgaattaactataatgacaattcagatgagaatgacgataaatatgggagaattatcaattctcacatcatttaattagaaagcaat 138  Q
    |||||||||||||||||||||||| | |||||||||  |||| ||||| ||||||||||||||||||||||||||| |||| | ||||||||||||||||    
T  18556309 aatcgacacccattgaattaactacagtgacaattcgtatgaaaatgaagataaatatgggagaattatcaattctaacattagttaattagaaagcaat 18556210  T
Q  139 acagaaaacattgttt 154  Q
    ||| | || |||||||    
T  18556209 acaaacaatattgttt 18556194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 12908426 - 12908327
Alignment:
Q  18 attttaataaagatttgattaaatcgacacccattgaattaactataatgacaattcagatgagaatgacg-----ataaatatgggagaattatcaatt 112  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| | |||||||||  |||||||||| |     ||||||||||||||||||||||||    
T  12908426 attttaataaagatttgattaaatatacacccattgaattaactacattgacaattcttatgagaatgaagataaaataaatatgggagaattatcaatt 12908327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 12933505 - 12933406
Alignment:
Q  18 attttaataaagatttgattaaatcgacacccattgaattaactataatgacaattcagatgagaatgacg-----ataaatatgggagaattatcaatt 112  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| | |||||||||  |||||||||| |     ||||||||||||||||||||||||    
T  12933505 attttaataaagatttgattaaatatacacccattgaattaactacattgacaattcttatgagaatgaagataaaataaatatgggagaattatcaatt 12933406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 303
Target Start/End: Complemental strand, 12900546 - 12900486
Alignment:
Q  243 ttctctttccacaaatgatttagaaattttgttcaagacctgaaattaacatcaagaaggt 303  Q
    |||||||| |||||| || |||||||||||||||||||||||||||||| |||||||||||    
T  12900546 ttctctttgcacaaacgacttagaaattttgttcaagacctgaaattaaaatcaagaaggt 12900486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 12900607 - 12900553
Alignment:
Q  164 aactagtatactaagcattgccacttgtgattccagctgaccattcattttctta 218  Q
    |||||||| ||||||||||||| | |||||||||||| |||||||||||||||||    
T  12900607 aactagtaaactaagcattgccgcatgtgattccagcggaccattcattttctta 12900553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 10613483 - 10613358
Alignment:
Q  17 aattttaataaagatttgattaaatcgacacccattgaattaactata--atgacaattcagatgagaatgacgataaatatgggagaattatcaattct 114  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||  ||||||||||  | || ||||| |||||||||| ||||| ||||||||||    
T  10613483 aatttcaataaagatttgattaaatcaacacccattgaattaactataccatgacaattcttaggaaaatgaagataaatatgagagaagtatcaattct 10613384  T
Q  115 cacatcatttaattagaaagcaatac 140  Q
    ||| ||||| ||||||||||||||||    
T  10613383 cacttcattgaattagaaagcaatac 10613358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 10605924 - 10605861
Alignment:
Q  108 caattctcacatcatttaattagaaagcaatacagaaaacattgtttatttatagcaactagta 171  Q
    ||||||| || | ||| ||||||||||||||||| | || ||||||||||||||||||||||||    
T  10605924 caattcttactttattgaattagaaagcaatacaaacaatattgtttatttatagcaactagta 10605861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 350
Target Start/End: Complemental strand, 10612699 - 10612645
Alignment:
Q  296 aagaaggttattattacaattatattttgtagtttgggaattttgaaatgcacaa 350  Q
    |||||||  |||||||| ||||||||||| ||||| |||| ||||||||||||||    
T  10612699 aagaaggccattattactattatattttgaagtttaggaaatttgaaatgcacaa 10612645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 10761839 - 10761891
Alignment:
Q  109 aattctcacatcatttaattagaaagcaatacagaaaacattgtttatttata 161  Q
    ||||||||| ||||| ||||||||||||||||| | || |||||||| |||||    
T  10761839 aattctcacttcattgaattagaaagcaatacaaacaatattgtttacttata 10761891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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