View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_107 (Length: 352)
Name: NF7850A_low_107
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_107 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 352
Target Start/End: Original strand, 43106232 - 43106577
Alignment:
| Q |
16 |
attatccaactgaaacatgggttcttaactttttattcatagtaaaatgtaaaatagtcttaggctacctacttgattaagctataagaaaggtgcaaaa |
115 |
Q |
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| T |
43106232 |
attatccaactgaaacatgggttcttaacttcttattcatagtaaaatctaaaatagtcttaggctacctacttgattaagttgtaagaaaggtgcaaaa |
43106331 |
T |
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| Q |
116 |
ttatggtcatactagtaa---------ttaagagtttcaaattgttttatggagtcagaattgtatgcaacatacaaaagagaattgtgttataaaacta |
206 |
Q |
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| T |
43106332 |
ttatggtcatactagtaattaagagttttaagagtttcaaattgtgttatgcagtcagaattgtatgcaacatacaaaagagaattgtgttataaaacta |
43106431 |
T |
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| Q |
207 |
gtttatgttcccctcnnnnnnnnnnnnnnnnnnnctagtttatgtagaggaaattaagaaatgttaatactatgtgatgtgatattagaaaccactagga |
306 |
Q |
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| T |
43106432 |
gtttatgttcccctcaaaaaacaaaaacaaaaaactagtttatgtagaggaaattaagaaatgttaatactatgtgatgtgatattagaaaccactaggg |
43106531 |
T |
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| Q |
307 |
gcagagaaaaaggaaattcatggagagaagggttagcatatcattg |
352 |
Q |
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| T |
43106532 |
gcagagaaaaaggaaattcagagagagaagggttagagtatcattg |
43106577 |
T |
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