View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_112 (Length: 350)
Name: NF7850A_low_112
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_112 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 6e-96; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 151 - 344
Target Start/End: Original strand, 8260709 - 8260902
Alignment:
| Q |
151 |
atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcacttt |
250 |
Q |
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| T |
8260709 |
atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcacttt |
8260808 |
T |
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| Q |
251 |
gaagagggttttctgtttatggaagtgtgaaaagctgaaatgatttagctgtaggttggacttcatgtagttaacttgatctatttatagatat |
344 |
Q |
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| T |
8260809 |
gaagagggttttctgtttatgtaagtgtggaaagctgaaatgatttagttgtaggttgaacttcatgtagttaacttgatctatttatagatat |
8260902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 151 - 341
Target Start/End: Original strand, 8265675 - 8265866
Alignment:
| Q |
151 |
atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaa-agtgatttaatttgcactt |
249 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
8265675 |
atcataatcagaaacttgagacgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccataaaaaaagtgatttaatttgcactt |
8265774 |
T |
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| Q |
250 |
tgaagagggttttctgtttatggaagtgtgaaaagctgaaatgatttagctgtaggttggacttcatgtagttaacttgatctatttataga |
341 |
Q |
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| T |
8265775 |
tgaagtgggtttcttgtttatgtaagtgtggaaagctgaaatgatttagttgtgggttgaacttcatgtaattaacttgatccatttataga |
8265866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 151 - 341
Target Start/End: Original strand, 8258602 - 8258796
Alignment:
| Q |
151 |
atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaa-agtgatttaatttgcactt |
249 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||| | |||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
8258602 |
atcataatcagaaacttgagatgatgagtttgaagaatggccaaagcaacttaaaatggatgaaatcaaagccataaaaaaagtgatttaatttgcactt |
8258701 |
T |
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| Q |
250 |
tgaagagggttttctgtttatggaagtgtgaaaagctgaaatgatttagctgtaggttggacttcatgtagt---taacttgatctatttataga |
341 |
Q |
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| T |
8258702 |
tgaagtgggttttttgtttatgtaagtgtgcaaagctgaaatgatttagttgtgggttgaacttcatgtaattaataacttgatctatttataga |
8258796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 8260559 - 8260641
Alignment:
| Q |
1 |
agaaagtggacgcggattaatactgcatgactacaaacgagagatctaagagttaacagggaaataagaaactacaattggag |
83 |
Q |
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| T |
8260559 |
agaaagtggatgcagattaatactgcatgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggag |
8260641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 157 - 248
Target Start/End: Original strand, 8350129 - 8350220
Alignment:
| Q |
157 |
atcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcact |
248 |
Q |
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||||||||||||||| ||||||| | ||||| | ||||| ||| | ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8350129 |
atcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaaaaagtgatttaatttgcact |
8350220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 151 - 248
Target Start/End: Original strand, 8352867 - 8352964
Alignment:
| Q |
151 |
atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcact |
248 |
Q |
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|||||||||| |||||||||| ||||||| ||||| | ||||||||| | || || |||||||||||||||||||||||||||||| |||||||| |
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| T |
8352867 |
atcataatcataaacttgagaagatgagttcgaagaaggaccaaagcaattgaaaaatgatgaaatcaaagccatcaaaaagtgatttggtttgcact |
8352964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 8252975 - 8253046
Alignment:
| Q |
157 |
atcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaa |
228 |
Q |
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||||||||||||||| ||||||| | ||||| | ||||| ||| | ||||| |||||||||||||||||||| |
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| T |
8252975 |
atcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaa |
8253046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 8265551 - 8265607
Alignment:
| Q |
27 |
atgactacaaacgagagatctaagagttaacagggaaataagaaactacaattggag |
83 |
Q |
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|||||||||||||||||| ||||||||| ||||||||| | | ||||||||||||| |
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| T |
8265551 |
atgactacaaacgagagagataagagttagcagggaaatgatatactacaattggag |
8265607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 8356436 - 8356508
Alignment:
| Q |
153 |
cataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccat |
225 |
Q |
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||||||||||||||||||||||||||| | |||| | ||||||||| | ||||| | | ||||||||||||| |
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| T |
8356436 |
cataatcagaaacttgagatgatgagtttgaagagagaccaaagcaattgaagaacggtaaaatcaaagccat |
8356508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 8350014 - 8350073
Alignment:
| Q |
24 |
tgcatgactacaaacgagagatctaagagttaacagggaaataagaaactacaattggag |
83 |
Q |
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||||||||||||| || ||| ||| |||||||||||||||||||||||| |||||||| |
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| T |
8350014 |
tgcatgactacaagcgtgagggataatagttaacagggaaataagaaactataattggag |
8350073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 80
Target Start/End: Original strand, 8352767 - 8352796
Alignment:
| Q |
51 |
agttaacagggaaataagaaactacaattg |
80 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
8352767 |
agttaacagggaaataagaaactacaattg |
8352796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 8360609 - 8360681
Alignment:
| Q |
153 |
cataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccat |
225 |
Q |
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||||||||||||||||||||||| ||| | |||| | || |||||| | ||||| | ||||||||||||||| |
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| T |
8360609 |
cataatcagaaacttgagatgataagtttgaagagagaccgaagcaattgaagaaagctgaaatcaaagccat |
8360681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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