View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_119 (Length: 346)
Name: NF7850A_low_119
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_119 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 329
Target Start/End: Original strand, 22728585 - 22728905
Alignment:
| Q |
11 |
tatgaactttgcaccttt--ttgtttttggaaggatcgacataaatctcaaacgagtgtgatttctttgattaagtatgggtacacctgtcggcacaaaa |
108 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22728585 |
tatgaactttgcacctttgtttgtttttggaaggatcaacataaatctcaaacgagtgtgatttctttgattaagtatgggtacacttgtcggcacaaaa |
22728684 |
T |
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| Q |
109 |
caaggtaatagannnnnnnnnnnnnnnnnnaagaaattattagttaatgttatgcatagtcaccttcatatagaagggtggtttgattattgaataattg |
208 |
Q |
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| T |
22728685 |
caaggtaatagatttatttttattttttttaagaaattattagttaatgttatgcatagtcaccttcatatagaagggtggtttgattattgaataattg |
22728784 |
T |
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| Q |
209 |
gtaaacttatatgttttgattcttatgcagatgttgttgaaaattaccaagagatgggttgtttaaatttggttaaggatataatattggagctaaacgt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||| |
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| T |
22728785 |
gtaaacttatatgttttgattcttatgcagatgttgttgaaaattaccaagagatgggttatttaaattaggttaaggatataatattggagctaagcgt |
22728884 |
T |
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| Q |
309 |
ggcataggatgaatggttgct |
329 |
Q |
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||| ||| ||||||||||||| |
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| T |
22728885 |
ggcgtagaatgaatggttgct |
22728905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 181 - 329
Target Start/End: Original strand, 28840613 - 28840763
Alignment:
| Q |
181 |
gaagggtggtttgattattgaataattggtaaacttatatgttttgattcttat--gcagatgttgttgaaaattaccaagagatgggttgtttaaattt |
278 |
Q |
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| T |
28840613 |
gaagtgtggtttgattattgaataattggtaaacttatatgttttgactcttatatgcagatgttgttgaaaattaccaagagatgggttgtttaaattt |
28840712 |
T |
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| Q |
279 |
ggttaaggatataatattggagctaaacgtggcataggatgaatggttgct |
329 |
Q |
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| T |
28840713 |
ggttaaggatataatattggagctaagcttggcataggatgaatggttgct |
28840763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 11 - 181
Target Start/End: Original strand, 28840134 - 28840299
Alignment:
| Q |
11 |
tatgaactttgcaccttt--ttgtttttggaaggatcgacataaatctcaaacgagtgtgatttctttgattaagtatgggtacacctgtcggcacaaaa |
108 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28840134 |
tatgaactttgcacctttgtttgtttttggaaggatcaacataaatctcaaacgagtgtgatttctttgattaagtatgggtacacctgtcggcacaaaa |
28840233 |
T |
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| Q |
109 |
caaggtaatagannnnnnnnnnnnnnnnnnaagaaattattagttaatgttatgcatagtcaccttcatatag |
181 |
Q |
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| T |
28840234 |
caaggtaattga-------tttttttttttaagaaattattagttaatgttatgcatagtcaccttcatatag |
28840299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 27651869 - 27651833
Alignment:
| Q |
52 |
aatctcaaacgagtgtgatttctttgattaagtatgg |
88 |
Q |
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|||||| |||||||||||||||||||||||| ||||| |
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| T |
27651869 |
aatctccaacgagtgtgatttctttgattaaatatgg |
27651833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 30834260 - 30834296
Alignment:
| Q |
51 |
aaatctcaaacgagtgtgatttctttgattaagtatg |
87 |
Q |
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||||||| |||||||||||||||||||||||| |||| |
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| T |
30834260 |
aaatctctaacgagtgtgatttctttgattaaatatg |
30834296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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