View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_138 (Length: 336)

Name: NF7850A_low_138
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_138
NF7850A_low_138
[»] scaffold0128 (3 HSPs)
scaffold0128 (12-220)||(18871-19078)
scaffold0128 (221-336)||(18564-18679)
scaffold0128 (12-57)||(5618-5663)
[»] chr8 (3 HSPs)
chr8 (256-336)||(13580396-13580478)
chr8 (291-336)||(28376666-28376711)
chr8 (271-335)||(22930331-22930395)
[»] chr1 (2 HSPs)
chr1 (258-336)||(8246762-8246840)
chr1 (258-336)||(1240436-1240514)
[»] chr6 (1 HSPs)
chr6 (258-336)||(12174329-12174407)
[»] chr5 (1 HSPs)
chr5 (258-336)||(16570538-16570616)
[»] chr4 (2 HSPs)
chr4 (290-336)||(47059699-47059745)
chr4 (290-336)||(47082057-47082103)
[»] chr2 (1 HSPs)
chr2 (258-336)||(40876967-40877045)


Alignment Details
Target: scaffold0128 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 19078 - 18871
Alignment:
Q  12 acatcaagagagccattaatgccttaactagaacagatacgatggcaactataactataacaataattcagtatcagatttgcttcaaaccagattacaa 111  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19078 acatcaagagagccattaatgtcttaactagaacagatacgatggcaactataactataacaataattcagtgtcagatttgcttcaaaccagattacaa 18979  T
Q  112 tgcaatcatttgttatggtgcttaatctctgtcaggaccgtttttgctactcagttcaattccctccttctttgtatcatcaattcttggctttgcaggt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18978 tgcaatcatttgttatggtgcttaatctctgtcaggaccgtttttgatactcagttcaattccctccttctttg-atcatcaattcttggctttgcaggt 18880  T
Q  212 ttggttacc 220  Q
    |||||||||    
T  18879 ttggttacc 18871  T

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Target: scaffold0128; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 221 - 336
Target Start/End: Complemental strand, 18679 - 18564
Alignment:
Q  221 attatttcattatccacataattaataacttaacattaaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaa 320  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  18679 attatttcattatccacataattaataacttaacattaaatatttattttatagaattattcaaagcaagttaaaaagaaatacatgtatataccactaa 18580  T
Q  321 ctaataagtaaaaata 336  Q
    ||||||||||||||||    
T  18579 ctaataagtaaaaata 18564  T

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Target: scaffold0128; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 5663 - 5618
Alignment:
Q  12 acatcaagagagccattaatgccttaactagaacagatacgatggc 57  Q
    |||||||||| | |||||||| |||||||||||||||||| |||||    
T  5663 acatcaagagggacattaatgtcttaactagaacagatactatggc 5618  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 336
Target Start/End: Original strand, 13580396 - 13580478
Alignment:
Q  256 ttaaatatatatttt--atagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaata 336  Q
    ||||| |||||||||  ||||||||| ||| ||| | ||||||||||||| || |||||| ||||||||| ||||||||||||    
T  13580396 ttaaaaatatattttcaatagaattaatcaaagcgaattaaaaagaaatatatttatataatactaactattaagtaaaaata 13580478  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 28376711 - 28376666
Alignment:
Q  291 ttaaaaagaaatacatgtatatactactaactaataagtaaaaata 336  Q
    ||||||||||||| || |||||| ||||||||| ||||||||||||    
T  28376711 ttaaaaagaaatatatctatatagtactaactactaagtaaaaata 28376666  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 335
Target Start/End: Complemental strand, 22930395 - 22930331
Alignment:
Q  271 atagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaat 335  Q
    ||||||||| ||| ||| | ||||||||| ||| || |||||| ||||||||| |||||||||||    
T  22930395 atagaattaatcaaagcgaattaaaaagatatatatctatatagtactaactattaagtaaaaat 22930331  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 336
Target Start/End: Original strand, 8246762 - 8246840
Alignment:
Q  258 aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaata 336  Q
    |||||||| ||  ||||||||| ||| | ||| ||||||||||||| || |||||| ||||||||| ||||||||||||    
T  8246762 aaatatattttcaatagaattaatcaaatcaaattaaaaagaaatatatctatatagtactaactattaagtaaaaata 8246840  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 336
Target Start/End: Complemental strand, 1240514 - 1240436
Alignment:
Q  258 aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaata 336  Q
    |||||||| ||  ||||||||| ||| |||   ||||||||||||| || |||||| ||||||||| ||||||||||||    
T  1240514 aaatatattttcaatagaattaatcaaagcggattaaaaagaaatatatttatatagtactaactactaagtaaaaata 1240436  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 336
Target Start/End: Complemental strand, 12174407 - 12174329
Alignment:
Q  258 aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaata 336  Q
    |||||||| ||| ||| ||||| ||| | | | ||||||||||||| || |||||| ||||||||| ||||||||||||    
T  12174407 aaatatatttttaatataattaatcaaaacgaattaaaaagaaatatatctatatagtactaactactaagtaaaaata 12174329  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 336
Target Start/End: Original strand, 16570538 - 16570616
Alignment:
Q  258 aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaata 336  Q
    |||||||| ||| ||||||||| ||| ||  | ||||||||||||| || |||||  ||| ||||||||||||||||||    
T  16570538 aaatatatttttaatagaattaatcaaagtgaattaaaaagaaatatatctatatggtaccaactaataagtaaaaata 16570616  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 47059745 - 47059699
Alignment:
Q  290 gttaaaaagaaatacatgtatatactactaactaataagtaaaaata 336  Q
    |||||||||||||| || | |||| ||||||||||||||||||||||    
T  47059745 gttaaaaagaaatatatttgtataatactaactaataagtaaaaata 47059699  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 47082057 - 47082103
Alignment:
Q  290 gttaaaaagaaatacatgtatatactactaactaataagtaaaaata 336  Q
    |||||||||||||| || | |||| ||||||||||||||||||||||    
T  47082057 gttaaaaagaaatatatttgtataatactaactaataagtaaaaata 47082103  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 336
Target Start/End: Original strand, 40876967 - 40877045
Alignment:
Q  258 aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaata 336  Q
    |||||||| ||  ||||||||| ||  | ||||||||||||||||| || |||||| |||||||||  |||||||||||    
T  40876967 aaatatattttcaatagaattaatccaaacaagttaaaaagaaatatatttatataatactaactaccaagtaaaaata 40877045  T

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