View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_139 (Length: 336)
Name: NF7850A_low_139
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_139 |
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Alignment Details
Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 27 - 135
Target Start/End: Original strand, 23423629 - 23423737
Alignment:
| Q |
27 |
aggtatactggagcacctgttccgacacgctgggcgtatcttcctttcttcaagtatctaccgattcttccaactgggaactgaagactagctctgatgg |
126 |
Q |
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|||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||| || || ||||||| ||||||||||| |
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| T |
23423629 |
aggtatactggagcacctgtgcctacacgctgagcgtatcttcctttcttcaagtatctaccgattcttccaaccggaaattgaagaccagctctgatgg |
23423728 |
T |
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| Q |
127 |
atcttgtca |
135 |
Q |
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||||||||| |
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| T |
23423729 |
atcttgtca |
23423737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 27 - 135
Target Start/End: Complemental strand, 24298115 - 24298007
Alignment:
| Q |
27 |
aggtatactggagcacctgttccgacacgctgggcgtatcttcctttcttcaagtatctaccgattcttccaactgggaactgaagactagctctgatgg |
126 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||||| |||||||| | |
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| T |
24298115 |
aggtataccggagcacctgttccgacacgctgagcgtatcttcctttcttcaagtatctaccgattcttcccactggaaattgaagaccggctctgattg |
24298016 |
T |
|
| Q |
127 |
atcttgtca |
135 |
Q |
| |
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||||||||| |
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| T |
24298015 |
atcttgtca |
24298007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 27 - 135
Target Start/End: Original strand, 23448129 - 23448237
Alignment:
| Q |
27 |
aggtatactggagcacctgttccgacacgctgggcgtatcttcctttcttcaagtatctaccgattcttccaactgggaactgaagactagctctgatgg |
126 |
Q |
| |
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|||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||||| |||||||| | |
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| T |
23448129 |
aggtatactggagcacctgtgcctacacgctgagcgtatcttcctttcttcaagtatctaccgattcttcccactggaaattgaagaccggctctgattg |
23448228 |
T |
|
| Q |
127 |
atcttgtca |
135 |
Q |
| |
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||||||||| |
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| T |
23448229 |
atcttgtca |
23448237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 27 - 135
Target Start/End: Complemental strand, 23875324 - 23875216
Alignment:
| Q |
27 |
aggtatactggagcacctgttccgacacgctgggcgtatcttcctttcttcaagtatctaccgattcttccaactgggaactgaagactagctctgatgg |
126 |
Q |
| |
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|||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||||| |||||||| | |
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| T |
23875324 |
aggtatactggagcacctgtgcctacacgctgagcgtatcttcctttcttcaagtatctaccgattcttcccactggaaattgaagaccggctctgattg |
23875225 |
T |
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| Q |
127 |
atcttgtca |
135 |
Q |
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||||||||| |
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| T |
23875224 |
atcttgtca |
23875216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 135
Target Start/End: Complemental strand, 26827876 - 26827768
Alignment:
| Q |
27 |
aggtatactggagcacctgttccgacacgctgggcgtatcttcctttcttcaagtatctaccgattcttccaactgggaactgaagactagctctgatgg |
126 |
Q |
| |
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||||| || |||||||| || ||||||||||| || |||| |||||||||| ||| | ||||||||||| |||||||| || || | |||||||||| |
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| T |
26827876 |
aggtaaaccggagcaccggtgccgacacgctgagcatatcgacctttcttcaggtaacggccgattcttccgactgggaattggagtccggctctgatgg |
26827777 |
T |
|
| Q |
127 |
atcttgtca |
135 |
Q |
| |
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||||||||| |
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| T |
26827776 |
atcttgtca |
26827768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 27 - 135
Target Start/End: Original strand, 41244624 - 41244732
Alignment:
| Q |
27 |
aggtatactggagcacctgttccgacacgctgggcgtatcttcctttcttcaagtatctaccgattcttccaactgggaactgaagactagctctgatgg |
126 |
Q |
| |
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||||| || |||||||| || || |||||||| ||||||||||||||||||||||| | |||||||||||||||||| || ||||||| ||||||||||| |
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| T |
41244624 |
aggtaaacaggagcaccagtaccaacacgctgagcgtatcttcctttcttcaagtaccgaccgattcttccaactggaaattgaagaccagctctgatgg |
41244723 |
T |
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| Q |
127 |
atcttgtca |
135 |
Q |
| |
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|||| |||| |
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|
| T |
41244724 |
atctggtca |
41244732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 36 - 135
Target Start/End: Complemental strand, 41257672 - 41257573
Alignment:
| Q |
36 |
ggagcacctgttccgacacgctgggcgtatcttcctttcttcaagtatctaccgattcttccaactgggaactgaagactagctctgatggatcttgtca |
135 |
Q |
| |
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|||||||| || || |||||||| ||||||||||||||||||||||| | |||||||||||| ||||| || ||||||| ||||||| |||||||||||| |
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| T |
41257672 |
ggagcaccagtaccaacacgctgagcgtatcttcctttcttcaagtaacgaccgattcttccgactggaaattgaagaccagctctggtggatcttgtca |
41257573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 35961649 - 35961552
Alignment:
| Q |
36 |
ggagcacctgttccgacacgctgggcgtatcttcctttcttcaagtatctaccgattcttccaactgggaactgaagactagctctgatggatcttgt |
133 |
Q |
| |
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|||||||| || |||||||| || || |||| |||||||||||||| | ||||||||||| |||||||| ||||| | |||||||| |||||||| |
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| T |
35961649 |
ggagcaccggtgccgacacgttgagcatatcgacctttcttcaagtaacggccgattcttcccactgggaattgaagtccggctctgattgatcttgt |
35961552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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