View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_142 (Length: 333)
Name: NF7850A_low_142
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_142 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-172; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 6 - 318
Target Start/End: Complemental strand, 2838812 - 2838500
Alignment:
| Q |
6 |
agacaatatgagaggttaattgaagaaagagctgcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaaggagaatctct |
105 |
Q |
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| T |
2838812 |
agacaatatgagaggttaattgaagaaagagctgcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaaggagaatctct |
2838713 |
T |
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| Q |
106 |
ttttggaaaaggaatttgaaagttataggccatcactttcatttgaaacttgtgatgatccatcacaggcagaaagcatcgtatcaaatgtgaagaaaga |
205 |
Q |
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| T |
2838712 |
ttttggaaaaggaacttgaaagttataggccatcactttcatttgaaacttgtgatgatccatcacaggcagaaagcatcgtatcaaatgtgaagaaaga |
2838613 |
T |
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| Q |
206 |
ttgcgctgatgcagaccatggagaagaggtggaggaaaacagtcaacacaaggatcaagtgtgcaatgatatgcatagatccttttatgatactgagtct |
305 |
Q |
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| T |
2838612 |
ttgcgctgatgcagaccatggagaagaggtggaggaaaacagtcaacacaaggatcaagcgtgcaatgatatgcatagatccttttatgatactgagtct |
2838513 |
T |
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| Q |
306 |
gatgttcttgatg |
318 |
Q |
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| T |
2838512 |
gatgttcttgatg |
2838500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 6 - 135
Target Start/End: Complemental strand, 2842913 - 2842784
Alignment:
| Q |
6 |
agacaatatgagaggttaattgaagaaagagctgcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaaggagaatctct |
105 |
Q |
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| T |
2842913 |
agacaatacgagaggttaattgaagaaagagtttcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaagggaaaatcttt |
2842814 |
T |
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| Q |
106 |
ttttggaaaaggaatttgaaagttataggc |
135 |
Q |
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| T |
2842813 |
ttttggaaaaggaacttgaaacttttaggc |
2842784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 271 - 322
Target Start/End: Complemental strand, 2842573 - 2842522
Alignment:
| Q |
271 |
atgatatgcatagatccttttatgatactgagtctgatgttcttgatgtcca |
322 |
Q |
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| T |
2842573 |
atgatttgcatagctccttttatgatactgagtctgatgttcttgatgtcca |
2842522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 173
Target Start/End: Complemental strand, 2842705 - 2842671
Alignment:
| Q |
139 |
cactttcatttgaaacttgtgatgatccatcacag |
173 |
Q |
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| T |
2842705 |
cactttcatttgaaacatgtgatgatccatcacag |
2842671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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