View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7850A_low_143 (Length: 330)

Name: NF7850A_low_143
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7850A_low_143
NF7850A_low_143
[»] chr7 (15 HSPs)
chr7 (18-294)||(23840431-23840709)
chr7 (17-141)||(23861237-23861361)
chr7 (17-141)||(23864831-23864955)
chr7 (17-142)||(23844033-23844158)
chr7 (17-141)||(23857268-23857392)
chr7 (27-141)||(23817442-23817556)
chr7 (17-141)||(23791695-23791819)
chr7 (17-141)||(23802490-23802614)
chr7 (29-141)||(23838094-23838206)
chr7 (21-141)||(23807958-23808078)
chr7 (18-141)||(23852962-23853085)
chr7 (17-141)||(23828102-23828226)
chr7 (19-88)||(23797963-23798032)
chr7 (19-88)||(23823181-23823250)
chr7 (29-141)||(23855348-23855460)


Alignment Details
Target: chr7 (Bit Score: 131; Significance: 6e-68; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 23840709 - 23840431
Alignment:
Q  18 tcagaatcccttgtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctgatccataccaaaaatcattggctcgattttggt 117  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| |  |||||||| |||||| | | ||||||||||||||||    
T  23840709 tcagaatctcttgtgattcttgagtacattgatgaggtttggaagcaaaaccccattttgccaactgatccacaccaaagagccttggctcgattttggt 23840610  T
Q  118 cgaaattcatcgatgacaaggtaac--nnnnnnncagtgtctttttgagtctttgtacttcgtataacgggttgtctttgtgttgcgatccttaatattg 215  Q
    |||||||||||||||||||||||||          ||| | ||||| ||| | |||||||| ||||||  |||||||| |||||||||||||||||||||    
T  23840609 cgaaattcatcgatgacaaggtaacttcttcttttagtattttttttagtatatgtacttcctataacacgttgtcttcgtgttgcgatccttaatattg 23840510  T
Q  216 tgtagaatcgcgattagatataactgatgcaaccgttatgtcacagcctacatagctgtcataaatctttatttaaacc 294  Q
     ||||||||||| ||||||||||||||||||||| ||||||||||  ||| |||||||||  || ||||||||||||||    
T  23840509 cgtagaatcgcggttagatataactgatgcaaccattatgtcacaagctagatagctgtcgcaagtctttatttaaacc 23840431  T

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Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 23861361 - 23861237
Alignment:
Q  17 atcagaatcccttgtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctgatccataccaaaaatcattggctcgattttgg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23861361 atcagaatcccttgtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctgatccataccaaaaatcattggctcgattttgg 23861262  T
Q  117 tcgaaattcatcgatgacaaggtaa 141  Q
    |||||||||||||||||||||||||    
T  23861261 tcgaaattcatcgatgacaaggtaa 23861237  T

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Target: chr7; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 23864955 - 23864831
Alignment:
Q  17 atcagaatcccttgtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctgatccataccaaaaatcattggctcgattttgg 116  Q
    ||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||    
T  23864955 atcagaatctcttgtgattcttcagtatattgatgaggtttggaaacaaaatcccattttaccgtccgatccataccaaaaatcattggctcgattttgg 23864856  T
Q  117 tcgaaattcatcgatgacaaggtaa 141  Q
    || || |||||||||||||||||||    
T  23864855 tccaagttcatcgatgacaaggtaa 23864831  T

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Target: chr7; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 23844158 - 23844033
Alignment:
Q  17 atcagaatcccttgtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctgatccataccaaaaatcattggctcgattttgg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||| | ||||||||| |||||| | | |||||||||||||||    
T  23844158 atcagaatcccttgtgattcttgagtacattgatgaggtttggaagcaaaaccctattttgccttctgatccacaccaaagagccttggctcgattttgg 23844059  T
Q  117 tcgaaattcatcgatgacaaggtaac 142  Q
    || |||||||||||||||||||||||    
T  23844058 tcaaaattcatcgatgacaaggtaac 23844033  T

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Target: chr7; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 23857392 - 23857268
Alignment:
Q  17 atcagaatcccttgtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctgatccataccaaaaatcattggctcgattttgg 116  Q
    |||||| |||||| ||||| ||||||| |||||||||  ||||||||||||||| || ||| | |||||||||||||||| | | |||||||||||||||    
T  23857392 atcagagtcccttttgattattgagtatattgatgagacttggaaacaaaatcctatcttgccttctgatccataccaaagagccttggctcgattttgg 23857293  T
Q  117 tcgaaattcatcgatgacaaggtaa 141  Q
    || || |||||||| ||||||||||    
T  23857292 tctaacttcatcgacgacaaggtaa 23857268  T

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Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 141
Target Start/End: Complemental strand, 23817556 - 23817442
Alignment:
Q  27 cttgtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctgatccataccaaaaatcattggctcgattttggtcgaaattca 126  Q
    |||||||||||||| || |||||||||  ||||||||||||||| || ||| | |||||||||||||||| | | |||| |||||||||||| ||  |||    
T  23817556 cttgtgattcttgaatatattgatgagacttggaaacaaaatccaatattgccttctgatccataccaaagagccttggttcgattttggtccaacctca 23817457  T
Q  127 tcgatgacaaggtaa 141  Q
    | |||||||||||||    
T  23817456 tagatgacaaggtaa 23817442  T

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Target: chr7; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 23791819 - 23791695
Alignment:
Q  17 atcagaatcccttgtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctgatccataccaaaaatcattggctcgattttgg 116  Q
    ||||||||||||||||||||||||||| |||||||||  ||||||||||||||| || ||| | |||||||| ||| ||| | | |||||||| || |||    
T  23791819 atcagaatcccttgtgattcttgagtatattgatgagacttggaaacaaaatcctatcttgccttctgatccttacgaaagagccttggctcgtttctgg 23791720  T
Q  117 tcgaaattcatcgatgacaaggtaa 141  Q
     | || ||||| ||||| |||||||    
T  23791719 accaagttcatagatgataaggtaa 23791695  T

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Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 23802614 - 23802490
Alignment:
Q  17 atcagaatcccttgtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctgatccataccaaaaatcattggctcgattttgg 116  Q
    |||||| ||||||||||||||||| || |||||||||  |||||||||||||||||| ||| | |||||||| | | ||| | | |||||||| || |||    
T  23802614 atcagagtcccttgtgattcttgaatatattgatgagacttggaaacaaaatcccatattgccttctgatccttccaaaagagccttggctcgtttctgg 23802515  T
Q  117 tcgaaattcatcgatgacaaggtaa 141  Q
    || || ||||| ||||| |||||||    
T  23802514 tccaatttcattgatgataaggtaa 23802490  T

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Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 141
Target Start/End: Original strand, 23838094 - 23838206
Alignment:
Q  29 tgtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctgatccataccaaaaatcattggctcgattttggtcgaaattcatc 128  Q
    |||||||||||||||||| ||||||  ||||||||||||||| || ||| | |||||||| || |||| | | |||||||| || ||||| || |||||     
T  23838094 tgtgattcttgagtacatcgatgagacttggaaacaaaatcctatcttgccttctgatccttatcaaagagccttggctcgtttctggtctaagttcatt 23838193  T
Q  129 gatgacaaggtaa 141  Q
    |||||||||||||    
T  23838194 gatgacaaggtaa 23838206  T

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Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 141
Target Start/End: Complemental strand, 23808078 - 23807958
Alignment:
Q  21 gaatcccttgtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctgatccataccaaaaatcattggctcgattttggtcga 120  Q
    ||||| ||||||||||||||||| |||||||||  |||||||||||| || || ||| | |||||||| || |||| | |  ||||||| || ||||| |    
T  23808078 gaatcacttgtgattcttgagtatattgatgagacttggaaacaaaaccctatcttgccttctgatccttatcaaagagccatggctcgtttctggtcca 23807979  T
Q  121 aattcatcgatgacaaggtaa 141  Q
    | ||||| |||||||||||||    
T  23807978 atttcattgatgacaaggtaa 23807958  T

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Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 23852962 - 23853085
Alignment:
Q  18 tcagaatcccttgtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctgatccataccaaaaatcattggctcgattttggt 117  Q
    |||||||| | ||||||||||||||| |||||||||| |||||||||||| || || ||| |   |||||| || |||| | | ||||  || |||||||    
T  23852962 tcagaatcacgtgtgattcttgagtatattgatgaggcttggaaacaaaaccctatcttgcccaatgatccttatcaaagagccttggaccgtttttggt 23853061  T
Q  118 cgaaattcatcgatgacaaggtaa 141  Q
    | || ||||| |||||||||||||    
T  23853062 ctaagttcattgatgacaaggtaa 23853085  T

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Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 23828226 - 23828102
Alignment:
Q  17 atcagaatcccttgtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctgatccataccaaaaatcattggctcgattttgg 116  Q
    |||||||||||||||||||||||||||  |||||||   |||||| |||||||| || ||  | |||||||| ||| ||| | | |||||||| || |||    
T  23828226 atcagaatcccttgtgattcttgagtatgttgatgaaacttggaagcaaaatcctatcttaccttctgatccttacaaaagagccttggctcgtttctgg 23828127  T
Q  117 tcgaaattcatcgatgacaaggtaa 141  Q
     | || ||||| ||||| |||||||    
T  23828126 acaaagttcatagatgataaggtaa 23828102  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 23798032 - 23797963
Alignment:
Q  19 cagaatcccttgtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctgatcc 88  Q
    ||||||| ||||||||| |||| || |||||||||  ||||||||||||||| || ||| | ||||||||    
T  23798032 cagaatctcttgtgattattgaatatattgatgagacttggaaacaaaatcctatcttgccttctgatcc 23797963  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 23823250 - 23823181
Alignment:
Q  19 cagaatcccttgtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctgatcc 88  Q
    ||||||| ||||||||| |||| || |||||||||  ||||||||||||||| || ||| | ||||||||    
T  23823250 cagaatctcttgtgattattgaatatattgatgagacttggaaacaaaatccaatcttgccttctgatcc 23823181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 141
Target Start/End: Original strand, 23855348 - 23855460
Alignment:
Q  29 tgtgattcttgagtacattgatgaggtttggaaacaaaatcccattttgtcgtctgatccataccaaaaatcattggctcgattttggtcgaaattcatc 128  Q
    ||||||||||||||| |||||||||  |||||||||||| || || ||| | |||||||| ||| ||| | | |||| ||| |||||| | || ||| |     
T  23855348 tgtgattcttgagtatattgatgagacttggaaacaaaaccctatcttgccttctgatccttacaaaagagccttggatcgcttttgggccaagttccta 23855447  T
Q  129 gatgacaaggtaa 141  Q
    ||||| |||||||    
T  23855448 gatgagaaggtaa 23855460  T

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