View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7850A_low_149 (Length: 322)
Name: NF7850A_low_149
Description: NF7850A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7850A_low_149 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 6e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 28 - 148
Target Start/End: Original strand, 53555636 - 53555756
Alignment:
| Q |
28 |
ctagtgaaaggattcacaattttacattctatacatgttgtgttagtcttgtattaattgtttgctatgtatctaagtgagttgaaataccacttgtatt |
127 |
Q |
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| T |
53555636 |
ctagtgaaaggattcacaattttacattctatacatgttgtgttagtcttgtattaattgtttgctatgtatctaagtgagttgaaataccacttgtatt |
53555735 |
T |
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| Q |
128 |
tctttttggatataatcttgc |
148 |
Q |
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| T |
53555736 |
tctttttggatataatcttgc |
53555756 |
T |
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Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 213 - 308
Target Start/End: Original strand, 53555826 - 53555921
Alignment:
| Q |
213 |
caatgtttttatacgtacagttcataatatagggttgtttaaagtaaaccttcgaaaaagagatgaatctatactatttttaataatattatgaga |
308 |
Q |
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| T |
53555826 |
caatgtttttatacgtacagttcataatatagggttgtttaaagtaaaccttcgaaaaagagatgaatctatactatgtttaataatattatgaga |
53555921 |
T |
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